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skchronicles
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RNA-seek
A comprehensive quality-control and quantification RNA-seq pipeline
https://www.sudosight.com/RNA-seek
MIT License
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Update star alignment rules in single-end.smk
#28
skchronicles
closed
9 months ago
0
Running the pipeline other than Biowulf
#27
erenada
closed
11 months ago
5
MultiQC bug
#26
felloumi
closed
2 years ago
4
Adding --rerun-incomplete to dry run command
#24
mtandon09
closed
2 years ago
0
Kraken database
#23
tovahmarkowitz
opened
2 years ago
0
Update build.smk
#22
dnousome
closed
3 years ago
0
RNA-seek Documentation
#21
kopardev
closed
3 years ago
2
SRA support
#20
kopardev
closed
3 years ago
1
build to accept gz files
#19
kopardev
opened
3 years ago
0
s3 location for common genome+annotation combinations
#18
kopardev
opened
3 years ago
1
rNA QC report integration
#17
kopardev
closed
3 years ago
1
Singularity cache
#16
kopardev
closed
3 years ago
1
GTF independence
#15
kopardev
closed
3 years ago
0
2pass STAR mode
#14
kopardev
closed
3 years ago
1
Possible Race Condition with s3 Remote files
#13
skchronicles
opened
3 years ago
0
Docker image for main entry point RNA-seek
#12
skchronicles
opened
3 years ago
0
AWS execution via Tibanna
#11
skchronicles
opened
3 years ago
0
Build all references files on the fly
#10
skchronicles
closed
3 years ago
2
Download Inputs from SRA
#9
skchronicles
opened
3 years ago
1
GATK4 RNA-seq short variant discovery (SNPs + Indels)
#7
skchronicles
opened
3 years ago
0
rMATS
#6
skchronicles
opened
3 years ago
0
Adding gene fusion caller Arriba
#5
skchronicles
closed
3 years ago
3
Adding fastqvalidator
#4
kopardev
closed
3 years ago
1
Small curated input dataset for continuous integration github actions workflow
#3
kopardev
opened
3 years ago
2
Using s3 bucket for resources
#2
kopardev
opened
3 years ago
5
Running STAR with GTF provided on the fly
#1
kopardev
closed
3 years ago
3