skembel picante issues - Githubissues

skembel / picante

R tools for integrating phylogenies and ecology

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issues

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PD.ses for low sample sizes

#38 abhitims closed 1 month ago
2
initial values for "corSymm" must be between -1 and 1

#37 sapuizait opened 8 months ago
2
node.age error in ses.pd function

#36 pabuveery opened 1 year ago
5
Hello, I believe I have a serious issue.

#35 sixgodliusen closed 11 months ago
1
This is an update of the phyEstimate functions

#34 kerby1998 closed 1 year ago
0
phyEstimateDisc vs phyEstimate: xtfrm.data.frame(x) : cannot xtfrm data frames

#33 alrichardbollans opened 1 year ago
7
Error in randomizeMatrix

#32 Angelly057 closed 10 months ago
2
How to calculate beta NRI and NTI in picante

#31 liaoyunshi opened 1 year ago
0
Enhance performance of comdist

#30 Antguz opened 1 year ago
1
PD rooted/unrooted NULL error

#29 damioresegun closed 2 years ago
3
rarefaction and PD?

#28 marwa38 closed 2 years ago
2
trialswap and independentswap algorithms don't preserve sample species richness

#27 joelnitta closed 3 years ago
5
randomizeMatrix with null.model = "independentswap" fails on small communities

#26 joelnitta closed 3 years ago
2
Error in dimnames(x) <- dnx : 'dimnames' applied to non-array

#25 Tom-python0121 opened 3 years ago
5
Phylogeny input file

#24 carolinapinapaez closed 3 years ago
1
Faulty assumption in node.age picks wrong root

#23 FlukeAndFeather closed 4 years ago
1
Difference between richness and sample.pool null.model in ses.mpd/ses.pd/ses.mntd ?

#22 gowachin closed 3 years ago
2
Feature request: biplot for Inter-Community Mean Pairwise Distance for traits data

#21 Jigyasa3 closed 4 years ago
1
Can AITCHISON distance be used in MNTD and MPD calculations?

#20 Jigyasa3 closed 4 years ago
1
Can monophyletic taxa in the tree be used as groups for differential testing?

#19 Jigyasa3 closed 4 years ago
1
bug in `pblmpredict` when argument `predict.originals` is TRUE

#18 guiblanchet closed 4 years ago
3
Bug in ses.pd function

#17 rafmolven closed 5 years ago
3
Wrap lines in vignette

#16 colinbrislawn closed 5 years ago
0
abundance weighted PD

#15 wcornwell opened 5 years ago
2
Strange PD results

#14 Greblica closed 6 years ago
1
Long lines are cut off in vignette PDF

#13 colinbrislawn closed 5 years ago
2
pd cannot use ultrametric tree(?)

#12 sagitaninta closed 5 years ago
1
Update match.comm.dist

#11 daijiang closed 7 years ago
0
Update MPD calculation to offer option to include/exclude intra-species distances

#10 skembel opened 8 years ago
0
Kcalc and phylosignal fail if the supplied data are not a vector

#9 skembel opened 8 years ago
0
match.phylo.data fails when given a data.frame with a single column

#8 skembel closed 1 year ago
1
Modifications to pd() function to improve speed

#7 mmuscarella closed 8 years ago
1
edit psc and add scale toggle

#6 mrhelmus closed 8 years ago
0
correct abundance weighted mpd

#5 leorjorge closed 8 years ago
1
abundance weighted MPD error

#4 leorjorge closed 5 years ago
2
fix issue #1 matrix2sample fails if rownames missing

#3 jarioksa closed 8 years ago
0
Make picante pass R CMD check

#2 jarioksa closed 8 years ago
0
matrix2sample fails if rownames missing

#1 skembel closed 8 years ago
2