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skojaku / degree-corrected-link-prediction-benchmark

Link prediction
MIT License
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Specifying the data folder with config.yaml #35

Closed skojaku closed 1 year ago

skojaku commented 1 year ago

With this PR, you now have the option to select your desired data folder path. This setting is no longer in Snakemake, but has been moved to the "workflow/config.yaml" file. Additionally, you can also choose whether to run the Snakemake for small networks or all networks in the same config.yaml file.

To aid in this transition, a template file, "workflow/config.template.yaml" has been created, so that you can easily keep the original settings.

rachithaiyappa commented 1 year ago

@skojaku btw I think the symlink from data to this repo was deleted in #30. Was that intentional? If not, could you please add it back in this PR?

skojaku commented 1 year ago

The sym link does not fit when working on a different machine, which I do. So I deleted. But now the path is customizable so feel free to add the symlink!