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skovaka / UNCALLED

Raw nanopore signal mapper that enables real-time targeted sequencing
MIT License
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installation problem #27

Closed aspitaleri closed 3 years ago

aspitaleri commented 3 years ago

Hi I am trying to install UNCALLED on our cluster using my own python environment: git clone --recursive https://github.com/skovaka/UNCALLED.git python3 setup.py install and I get this error: ModuleNotFoundError: No module named 'commands'

and I get also the below warnings (many): cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C [enabled by default] cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default] cc1plus: warning: command line option ‘-std=gnu99’ is valid for C/ObjC but not for C++ [enabled by default]

python 3.8.3 gcc version 4.8.5 20150623 (Red Hat 4.8.5-39) (GCC)

aspitaleri commented 3 years ago

My fault sorry - was missing read_until and pybind1. Everything went fine then.