uncalled list-ports - nothing listed

skovaka / UNCALLED

Raw nanopore signal mapper that enables real-time targeted sequencing

MIT License

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uncalled list-ports - nothing listed #4

Closed vincentmanz closed 4 years ago

vincentmanz commented 4 years ago

Hi,

I have installed UNCALLED and Read Until Api following the recommendations.

/opt/ont/minknow/ont-python/bin/python setup.py build_ext --library-dirs /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/ --include-dirs /usr/lib/x86_64-linux-gnu/hdf5/serial/include
sudo /opt/ont/minknow/ont-python/bin/python setup.py install

However, when I am trying to look for the port nothing is happening.

uncalled list-ports --log-dir /var/log/minknow/

Do you have any idea how to get it to work?

skovaka commented 4 years ago

Sorry about that, this should now be fixed in the most recent commit (tagged v1.1). The previous version was written for the previous version of the read_until_api which required a developer licence, but I've now updated everything to work with the newly public version. Let me know if you have any further issues.

vincentmanz commented 4 years ago

Brilliant, working now.