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skovaka / UNCALLED

Raw nanopore signal mapper that enables real-time targeted sequencing
MIT License
520 stars 44 forks source link

Uncalled in ubuntu 16 #41

Open joscarhuguet opened 2 years ago

joscarhuguet commented 2 years ago

Hello. Trying to test Uncalled. Followed the instructions to install it in my computer (ubuntu 16, python3.7) It seems that the compilation is failing. I try to install multiple libraries to fix the problem but still no success. I also update the gcc

It is falling with Fatal error : Python.h No such file or directory

error command 'usr/bun/x86_64-linuc-gnu-gcc' failed with exit code 1

Thanks

skovaka commented 2 years ago

Try installing python-dev with the command sudo apt-get install python3-dev. Sorry for the issue, I thought that would be installed by default

joscarhuguet commented 2 years ago

Thanks for your quick reply. Yes. I installed python3-dev. Still some error. I believe it is something with my gcc , that is missing a lib. I will keep trying and post it when I fix it. Thanks a lot

joscarhuguet commented 2 years ago

I re-installed ubuntu.

NAME="Ubuntu" VERSION="20.04.4 LTS (Focal Fossa)" ID=ubuntu ID_LIKE=debian PRETTY_NAME="Ubuntu 20.04.4 LTS" VERSION_ID="20.04"

Running some simulations. Looks good so far. Thanks