how to visualize the bedfile from pureclip using IGV

skrakau / PureCLIP

Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data

GNU General Public License v3.0

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how to visualize the bedfile from pureclip using IGV #25

Open qicaibiology opened 3 years ago

qicaibiology commented 3 years ago

What do I need to do to visualize the bed files generated. It looks that when I load it to IGV, and type some genes, I see no peak on the track. I remembered when I download other bed file that has been published I will see peaks even without using aligned bam files.

Where could be the problem?

Thanks

HibaLaghrissi commented 1 year ago

Hi, did you find an answer to your question ? thank you :)