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slaclab / anarel-manage

Manage the conda based analysis release environments that include psana at LCLS.
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new packages #14

Closed davidslac closed 7 years ago

davidslac commented 7 years ago

h5py 2.7 rc3 git cmake conda - does sed -E fix work on rhel5? 4.3.8 conda-build 2.1.2 tf 12 keras

davidslac commented 7 years ago

h5py 2.7 rc3 is broken: https://github.com/h5py/h5py/issues/834, couldn't import it, don't want to use master branch in the releases,

davidslac commented 7 years ago

Will attempt to update conda and conda build - will test in rel5 dev, current packages in root:

anaconda-client           1.5.5                    py27_0    defaults
cffi                      1.9.1                    py27_0    defaults
clyent                    1.2.2                    py27_0    defaults
conda                     4.2.13                   py27_0    defaults
conda-build               2.1.0                    py27_0    defaults
conda-env                 2.6.0                         0    defaults
conda-verify              2.0.0                    py27_0    defaults
contextlib2               0.5.4                    py27_0    defaults
cryptography              1.7.1                    py27_0    defaults
enum34                    1.1.6                    py27_0    defaults
filelock                  2.0.7                    py27_0    defaults
futures                   3.0.5                    py27_0    defaults
idna                      2.1                      py27_0    defaults
ipaddress                 1.0.17                   py27_0    defaults
jinja2                    2.8                      py27_1    defaults
libffi                    3.2.1                         1    defaults
markupsafe                0.23                     py27_2    defaults
openssl                   1.0.2j                        0    defaults
patchelf                  0.9                           0    defaults
pip                       9.0.1                    py27_0    defaults
pkginfo                   1.4.1                    py27_0    defaults
pyasn1                    0.1.9                    py27_0    defaults
pycosat                   0.6.1                    py27_1    defaults
pycparser                 2.17                     py27_0    defaults
pycrypto                  2.6.1                    py27_4    defaults
pyopenssl                 16.2.0                   py27_0    defaults
python                    2.7.12                        1    defaults
python-dateutil           2.6.0                    py27_0    defaults
pytz                      2016.7                   py27_0    defaults
pyyaml                    3.12                     py27_0    defaults
readline                  6.2                           2    defaults
requests                  2.11.1                   py27_0    defaults
ruamel_yaml               0.11.14                  py27_0    defaults
setuptools                27.2.0                   py27_0    defaults
six                       1.10.0                   py27_0    defaults
sqlite                    3.13.0                        0    defaults
tk                        8.5.18                        0    defaults
wheel                     0.29.0                   py27_0    defaults
yaml                      0.1.6                         0    defaults
zlib                      1.2.8                         3    defaults
davidslac commented 7 years ago

Being brave, I'll update other packages that are new, except python, leave it a 2.7.12 , doing

conda update conda conda-build jinja2 pip wheel yaml pyyaml anaconda-client idna ipaddress openssl pytz requests ruamel_yaml

which gives

The following NEW packages will be INSTALLED:

    beautifulsoup4:  4.5.3-py27_0   defaults
    chardet:         2.3.0-py27_0   defaults

The following packages will be UPDATED:

    anaconda-client: 1.5.5-py27_0   defaults --> 1.6.0-py27_0   defaults
    conda:           4.2.13-py27_0  defaults --> 4.3.8-py27_0   defaults
    conda-build:     2.1.0-py27_0   defaults --> 2.1.2-py27_0   defaults
    idna:            2.1-py27_0     defaults --> 2.2-py27_0     defaults
    ipaddress:       1.0.17-py27_0  defaults --> 1.0.18-py27_0  defaults
    jinja2:          2.8-py27_1     defaults --> 2.9.4-py27_0   defaults
    openssl:         1.0.2j-0       defaults --> 1.0.2k-0       defaults
    pip:             9.0.1-py27_0   defaults --> 9.0.1-py27_1   defaults
    pytz:            2016.7-py27_0  defaults --> 2016.10-py27_0 defaults
    requests:        2.11.1-py27_0  defaults --> 2.12.4-py27_0  defaults
    ruamel_yaml:     0.11.14-py27_0 defaults --> 0.11.14-py27_1 defaults
davidslac commented 7 years ago

In conda 4.3, conda list --json returns a dict, not a list, breaking my testing code, may also break my admin code, reading through http://conda.pydata.org/docs/changelog.html I see some other interesting things: conda.cli.python_api and conda.exports python API to manipulate conda, should switch to this config path_conflict - should set this to prevent so we don't have those numpy issues from before,

made issue on conda about it.

davidslac commented 7 years ago

I won't do keras or tf->12 until we get cuda 8. looks like conda 4.3.8 will work