Can't load neurolex - Githubissues

GoogleCodeExporter commented 9 years ago

What steps will reproduce the problem?
1.Start wbc
2.load cells
3.pick a granule cell from the hippocampus view
4.Right click and select "open in neurolex"

What is the expected output? What do you see instead?
Doesn't load up neurolex.  Instead an exception is thrown.

Please use labels and text to provide additional information.
latest trunk version

Original issue reported on code.google.com by stephen....@gmail.com on 18 Mar 2010 at 9:33

GoogleCodeExporter commented 9 years ago

I can't reproduce this issue. Neurolex comes up find for me and no exception is 
thrown.

Original comment by piperfl...@gmail.com on 19 Mar 2010 at 6:54

GoogleCodeExporter commented 9 years ago

Original comment by stephen....@gmail.com on 8 Apr 2010 at 10:23

Changed state: WontFix

GoogleCodeExporter commented 9 years ago

Seen this again on the trunk version 0.7.6.11-SNAPSHOT:

Steps to reproduce:
1. Start wbc
2. Click on "dentate gyrus" under "cells" to load the dentate gyrus cells
3. Right click on a cell in the data type menu (i picked GranuleCell_915)
4. Select "open in neurolex"

Error pasted below.  Neurolex does not load.

Apr 30, 2010 1:15:13 AM java.util.logging.LogManager$RootLogger log
WARNING: Done creating objects 
Exception in thread "AWT-EventQueue-0" 
javax.xml.stream.FactoryConfigurationError: 
Provider com.bea.xml.stream.MXParserFactory not found
    at javax.xml.stream.FactoryFinder.newInstance(FactoryFinder.java:72)
    at javax.xml.stream.FactoryFinder.find(FactoryFinder.java:176)
    at javax.xml.stream.FactoryFinder.find(FactoryFinder.java:92)
    at javax.xml.stream.XMLInputFactory.newInstance(XMLInputFactory.java:136)
    at 
org.wholebrainproject.wbc.data.NeuroLexRDFReader.populateDataFromRDFURL(NeuroLex
RDFRe
ader.java:164)
    at 
org.wholebrainproject.wbc.data.NeuroLexRDFReader.preProcessID(NeuroLexRDFReader.
java:
131)
    at 
org.wholebrainproject.wbc.data.NeuroLexRDFReader.<init>(NeuroLexRDFReader.java:7
3)
    at 
org.wholebrainproject.wbc.view.gui2d.ContextMenu.executeAction(ContextMenu.java:
676)
    at 
org.wholebrainproject.wbc.view.gui2d.ContextMenu.actionPerformed(ContextMenu.jav
a:585
)
    at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1849)
    at 
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2169)
    at 
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:420)
    at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:258)
    at javax.swing.AbstractButton.doClick(AbstractButton.java:302)
    at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:1050)
    at 
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.jav
a:109
1)
    at java.awt.Component.processMouseEvent(Component.java:5517)
    at javax.swing.JComponent.processMouseEvent(JComponent.java:3129)
    at java.awt.Component.processEvent(Component.java:5282)
    at java.awt.Container.processEvent(Container.java:1966)
    at java.awt.Component.dispatchEventImpl(Component.java:3984)
    at java.awt.Container.dispatchEventImpl(Container.java:2024)
    at java.awt.Component.dispatchEvent(Component.java:3819)
    at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4212)
    at java.awt.LightweightDispatcher.processMouseEvent(Container.java:3892)
    at java.awt.LightweightDispatcher.dispatchEvent(Container.java:3822)
    at java.awt.Container.dispatchEventImpl(Container.java:2010)
    at java.awt.Window.dispatchEventImpl(Window.java:1791)
    at java.awt.Component.dispatchEvent(Component.java:3819)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
    at 
java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:2
42)
    at 
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:163
)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:157)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:149)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:110)

Original comment by stephen....@gmail.com on 30 Apr 2010 at 8:18

Changed state: Accepted

GoogleCodeExporter commented 9 years ago

Problem fixed on revision 2395.

Original comment by piperfl...@gmail.com on 5 May 2010 at 6:18

GoogleCodeExporter commented 9 years ago

Original comment by piperfl...@gmail.com on 5 May 2010 at 6:18

Changed state: Fixed

slarson / wholebrain

Can't load neurolex #457