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slarson / wholebrain

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Retina volumes not showing up on dev version #506

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1.Load dev version
2.select dev-data 
3.enable volumes

What is the expected output? What do you see instead?
Expect retina volumes to show up in the list.  Instead they are not listed and 
exceptions are thrown.

Please use labels and text to provide additional information.
C:\Program 
Files\Java\jre6\bin;.;C:\Windows\Sun\Java\bin;C:\Windows\system32;C:\Windows;C:\
Program 
Files\Java\jre6\bin;C:\Users\slarson\AppData\Local\Google\Chrome\Application;C:\
Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\Windows
PowerShell\v1.0\;C:\Program Files\ThinkPad\Bluetooth Software\;C:\Program 
Files\QuickTime\QTSystem\;C:\Program Files\apache-maven-2.2.1\bin;C:\Program 
Files\TortoiseSVN\bin;"C:\Program Files\Java\jre6\bin"
--06/21/10 15:10:27 INFO  commons.httpclient.HttpMethodDirector [Thread-53]:
 I/O exception (java.net.ConnectException) caught when processing request: Connection refused: connect
--06/21/10 15:10:27 INFO  commons.httpclient.HttpMethodDirector [Thread-53]:
 Retrying request
--06/21/10 15:10:28 INFO  commons.httpclient.HttpMethodDirector [Thread-53]:
 I/O exception (java.net.ConnectException) caught when processing request: Connection refused: connect
--06/21/10 15:10:28 INFO  commons.httpclient.HttpMethodDirector [Thread-53]:
 Retrying request
--06/21/10 15:10:34 INFO  commons.httpclient.HttpMethodDirector [Thread-53]:
 I/O exception (java.net.ConnectException) caught when processing request: Connection refused: connect
--06/21/10 15:10:34 INFO  commons.httpclient.HttpMethodDirector [Thread-53]:
 Retrying request
Jun 21, 2010 3:10:41 PM com.noelios.restlet.ext.httpclient.HttpMethodCall 
sendRequest
WARNING: An error occurred during the communication with the remote HTTP server.
java.net.ConnectException: Connection refused: connect
    at java.net.PlainSocketImpl.socketConnect(Native Method)
    at java.net.PlainSocketImpl.doConnect(Unknown Source)
    at java.net.PlainSocketImpl.connectToAddress(Unknown Source)
    at java.net.PlainSocketImpl.connect(Unknown Source)
    at java.net.SocksSocketImpl.connect(Unknown Source)
    at java.net.Socket.connect(Unknown Source)
    at java.net.Socket.connect(Unknown Source)
    at java.net.Socket.<init>(Unknown Source)
    at java.net.Socket.<init>(Unknown Source)
    at org.apache.commons.httpclient.protocol.DefaultProtocolSocketFactory.createSocket(DefaultProtocolSocketFactory.java:80)
    at org.apache.commons.httpclient.protocol.DefaultProtocolSocketFactory.createSocket(DefaultProtocolSocketFactory.java:122)
    at org.apache.commons.httpclient.HttpConnection.open(HttpConnection.java:707)
    at org.apache.commons.httpclient.MultiThreadedHttpConnectionManager$HttpConnectionAdapter.open(MultiThreadedHttpConnectionManager.java:1361)
    at org.apache.commons.httpclient.HttpMethodDirector.executeWithRetry(HttpMethodDirector.java:387)
    at org.apache.commons.httpclient.HttpMethodDirector.executeMethod(HttpMethodDirector.java:171)
    at org.apache.commons.httpclient.HttpClient.executeMethod(HttpClient.java:397)
    at org.apache.commons.httpclient.HttpClient.executeMethod(HttpClient.java:323)
    at com.noelios.restlet.ext.httpclient.HttpMethodCall.sendRequest(HttpMethodCall.java:313)
    at com.noelios.restlet.http.HttpClientConverter.commit(HttpClientConverter.java:418)
    at com.noelios.restlet.http.HttpClientHelper.handle(HttpClientHelper.java:108)
    at org.restlet.Client.handle(Client.java:157)
    at org.restlet.Uniform.handle(Uniform.java:108)
    at org.restlet.Uniform.get(Uniform.java:85)
    at org.wholebrainproject.volume.DataLoadingThread.getVolumeList(DataLoadingThread.java:195)
    at org.wholebrainproject.volume.DataLoadingThread.run(DataLoadingThread.java:148)
DataLoadingThread received volumeinfolist
java.lang.NullPointerException
    at org.wholebrainproject.wbc.view.tangible.VolumeView.getVolumeDataInfo(VolumeView.java:129)
    at org.wholebrainproject.wbc.view.tangible.VolumeView.setupVolume(VolumeView.java:188)
    at org.wholebrainproject.wbc.view.View3D.setVolumes(View3D.java:923)
    at org.wholebrainproject.wbc.observers.ApplicationObserver3D$1VolumeSetupTask.call(ApplicationObserver3D.java:164)
    at com.jme.util.GameTask.invoke(GameTask.java:140)
    at com.jme.util.GameTaskQueue.execute(GameTaskQueue.java:111)
    at com.jmex.awt.lwjgl.LWJGLCanvas.paintGL(LWJGLCanvas.java:135)
    at org.lwjgl.opengl.AWTGLCanvas.paint(AWTGLCanvas.java:288)
    at org.lwjgl.opengl.AWTGLCanvas.update(AWTGLCanvas.java:317)
    at sun.awt.RepaintArea.updateComponent(Unknown Source)
    at sun.awt.RepaintArea.paint(Unknown Source)
    at sun.awt.windows.WComponentPeer.handleEvent(Unknown Source)
    at java.awt.Component.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)
java.lang.NullPointerException
    at org.wholebrainproject.wbc.view.tangible.VolumeView.getVolumeDataInfo(VolumeView.java:129)
    at org.wholebrainproject.wbc.view.tangible.VolumeView.setupVolume(VolumeView.java:188)
    at org.wholebrainproject.wbc.view.View3D.setVolumes(View3D.java:923)
    at org.wholebrainproject.wbc.observers.ApplicationObserver3D$1VolumeSetupTask.call(ApplicationObserver3D.java:164)
    at com.jme.util.GameTask.invoke(GameTask.java:140)
    at com.jme.util.GameTaskQueue.execute(GameTaskQueue.java:111)
    at com.jmex.awt.lwjgl.LWJGLCanvas.paintGL(LWJGLCanvas.java:135)
    at org.lwjgl.opengl.AWTGLCanvas.paint(AWTGLCanvas.java:288)
    at org.lwjgl.opengl.AWTGLCanvas.update(AWTGLCanvas.java:317)
    at sun.awt.RepaintArea.updateComponent(Unknown Source)
    at sun.awt.RepaintArea.paint(Unknown Source)
    at sun.awt.windows.WComponentPeer.handleEvent(Unknown Source)
    at java.awt.Component.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)
java.lang.NullPointerException
    at org.wholebrainproject.wbc.view.tangible.VolumeView.getVolumeDataInfo(VolumeView.java:129)
    at org.wholebrainproject.wbc.view.tangible.VolumeView.setupVolume(VolumeView.java:188)
    at org.wholebrainproject.wbc.view.View3D.setVolumes(View3D.java:923)
    at org.wholebrainproject.wbc.observers.ApplicationObserver3D$1VolumeSetupTask.call(ApplicationObserver3D.java:164)
    at com.jme.util.GameTask.invoke(GameTask.java:140)
    at com.jme.util.GameTaskQueue.execute(GameTaskQueue.java:111)
    at com.jmex.awt.lwjgl.LWJGLCanvas.paintGL(LWJGLCanvas.java:135)
    at org.lwjgl.opengl.AWTGLCanvas.paint(AWTGLCanvas.java:288)
    at org.lwjgl.opengl.AWTGLCanvas.update(AWTGLCanvas.java:317)
    at sun.awt.RepaintArea.updateComponent(Unknown Source)
    at sun.awt.RepaintArea.paint(Unknown Source)
    at sun.awt.windows.WComponentPeer.handleEvent(Unknown Source)
    at java.awt.Component.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)
java.lang.NullPointerException
    at org.wholebrainproject.wbc.view.tangible.VolumeView.getVolumeDataInfo(VolumeView.java:129)
    at org.wholebrainproject.wbc.view.tangible.VolumeView.setupVolume(VolumeView.java:188)
    at org.wholebrainproject.wbc.view.View3D.setVolumes(View3D.java:923)
    at org.wholebrainproject.wbc.observers.ApplicationObserver3D$1VolumeSetupTask.call(ApplicationObserver3D.java:164)
    at com.jme.util.GameTask.invoke(GameTask.java:140)
    at com.jme.util.GameTaskQueue.execute(GameTaskQueue.java:111)
    at com.jmex.awt.lwjgl.LWJGLCanvas.paintGL(LWJGLCanvas.java:135)
    at org.lwjgl.opengl.AWTGLCanvas.paint(AWTGLCanvas.java:288)
    at org.lwjgl.opengl.AWTGLCanvas.update(AWTGLCanvas.java:317)
    at sun.awt.RepaintArea.updateComponent(Unknown Source)
    at sun.awt.RepaintArea.paint(Unknown Source)
    at sun.awt.windows.WComponentPeer.handleEvent(Unknown Source)
    at java.awt.Component.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)

Original issue reported on code.google.com by stephen....@gmail.com on 21 Jun 2010 at 10:15

Attachments:

GoogleCodeExporter commented 9 years ago 
seems server is not running ;)

Original comment by hanseok....@gmail.com on 25 Jun 2010 at 5:24

GoogleCodeExporter commented 9 years ago 
I just tested volume.wholebraincatalog.org and 
stage-volumen.wholebraincatalog.org. Both pass my quick test. Both respond to 
http://....org/ping/server. Both respond to 
http://....org/volumes/0?x=0&y=0&z=0&l=0&c=-1. Can't see any volume servers 
problems. Dave.

Original comment by davlit0...@gmail.com on 25 Jun 2010 at 5:52

GoogleCodeExporter commented 9 years ago 
Same behavior on Linux box using latest Dev version
Probably need to release a new client

home/caprea/jdk1.6.0_20/jre/lib/i386/server:/home/caprea/jdk1.6.0_20/jre/lib/i38
6:/home/caprea/jdk1.6.0_20/jre/../lib/i386:/usr/java/packages/lib/i386:/lib:/usr
/lib
--06/25/10 18:21:22 INFO  commons.httpclient.HttpMethodDirector [Thread-21]:
 I/O exception (java.net.ConnectException) caught when processing request: Connection refused
--06/25/10 18:21:22 INFO  commons.httpclient.HttpMethodDirector [Thread-21]:
 Retrying request
--06/25/10 18:21:22 INFO  commons.httpclient.HttpMethodDirector [Thread-21]:
 I/O exception (java.net.ConnectException) caught when processing request: Connection refused
--06/25/10 18:21:22 INFO  commons.httpclient.HttpMethodDirector [Thread-21]:
 Retrying request
--06/25/10 18:21:22 INFO  commons.httpclient.HttpMethodDirector [Thread-21]:
 I/O exception (java.net.ConnectException) caught when processing request: Connection refused
--06/25/10 18:21:22 INFO  commons.httpclient.HttpMethodDirector [Thread-21]:
 Retrying request
Jun 25, 2010 6:21:22 PM com.noelios.restlet.ext.httpclient.HttpMethodCall 
sendRequest
WARNING: An error occurred during the communication with the remote HTTP server.
java.net.ConnectException: Connection refused
    at java.net.PlainSocketImpl.socketConnect(Native Method)
    at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
    at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
    at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
    at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
    at java.net.Socket.connect(Socket.java:529)
    at java.net.Socket.connect(Socket.java:478)
    at java.net.Socket.<init>(Socket.java:375)
    at java.net.Socket.<init>(Socket.java:249)
    at org.apache.commons.httpclient.protocol.DefaultProtocolSocketFactory.createSocket(DefaultProtocolSocketFactory.java:80)
    at org.apache.commons.httpclient.protocol.DefaultProtocolSocketFactory.createSocket(DefaultProtocolSocketFactory.java:122)
    at org.apache.commons.httpclient.HttpConnection.open(HttpConnection.java:707)
    at org.apache.commons.httpclient.MultiThreadedHttpConnectionManager$HttpConnectionAdapter.open(MultiThreadedHttpConnectionManager.java:1361)
    at org.apache.commons.httpclient.HttpMethodDirector.executeWithRetry(HttpMethodDirector.java:387)
    at org.apache.commons.httpclient.HttpMethodDirector.executeMethod(HttpMethodDirector.java:171)
    at org.apache.commons.httpclient.HttpClient.executeMethod(HttpClient.java:397)
    at org.apache.commons.httpclient.HttpClient.executeMethod(HttpClient.java:323)
    at com.noelios.restlet.ext.httpclient.HttpMethodCall.sendRequest(HttpMethodCall.java:313)
    at com.noelios.restlet.http.HttpClientConverter.commit(HttpClientConverter.java:418)
    at com.noelios.restlet.http.HttpClientHelper.handle(HttpClientHelper.java:108)
    at org.restlet.Client.handle(Client.java:157)
    at org.restlet.Uniform.handle(Uniform.java:108)
    at org.restlet.Uniform.get(Uniform.java:85)
    at org.wholebrainproject.volume.DataLoadingThread.getVolumeList(DataLoadingThread.java:195)
    at org.wholebrainproject.volume.DataLoadingThread.run(DataLoadingThread.java:148)
DataLoadingThread received volumeinfolist
java.lang.NullPointerException
    at org.wholebrainproject.wbc.view.tangible.VolumeView.getVolumeDataInfo(VolumeView.java:129)
    at org.wholebrainproject.wbc.view.tangible.VolumeView.setupVolume(VolumeView.java:188)
    at org.wholebrainproject.wbc.view.View3D.setVolumes(View3D.java:923)
    at org.wholebrainproject.wbc.observers.ApplicationObserver3D$1VolumeSetupTask.call(ApplicationObserver3D.java:164)
    at com.jme.util.GameTask.invoke(GameTask.java:140)
    at com.jme.util.GameTaskQueue.execute(GameTaskQueue.java:111)
    at com.jmex.awt.lwjgl.LWJGLCanvas.paintGL(LWJGLCanvas.java:135)
    at org.lwjgl.opengl.AWTGLCanvas.paint(AWTGLCanvas.java:288)
    at sun.awt.RepaintArea.paintComponent(RepaintArea.java:248)
    at sun.awt.X11.XRepaintArea.paintComponent(XRepaintArea.java:56)
    at sun.awt.RepaintArea.paint(RepaintArea.java:224)
    at sun.awt.X11.XComponentPeer.handleEvent(XComponentPeer.java:695)
    at java.awt.Component.dispatchEventImpl(Component.java:4706)
    at java.awt.Component.dispatchEvent(Component.java:4460)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
java.lang.NullPointerException
    at org.wholebrainproject.wbc.view.tangible.VolumeView.getVolumeDataInfo(VolumeView.java:129)
    at org.wholebrainproject.wbc.view.tangible.VolumeView.setupVolume(VolumeView.java:188)
    at org.wholebrainproject.wbc.view.View3D.setVolumes(View3D.java:923)
    at org.wholebrainproject.wbc.observers.ApplicationObserver3D$1VolumeSetupTask.call(ApplicationObserver3D.java:164)
    at com.jme.util.GameTask.invoke(GameTask.java:140)
    at com.jme.util.GameTaskQueue.execute(GameTaskQueue.java:111)
    at com.jmex.awt.lwjgl.LWJGLCanvas.paintGL(LWJGLCanvas.java:135)
    at org.lwjgl.opengl.AWTGLCanvas.paint(AWTGLCanvas.java:288)
    at sun.awt.RepaintArea.paintComponent(RepaintArea.java:248)
    at sun.awt.X11.XRepaintArea.paintComponent(XRepaintArea.java:56)
    at sun.awt.RepaintArea.paint(RepaintArea.java:224)
    at sun.awt.X11.XComponentPeer.handleEvent(XComponentPeer.java:695)
    at java.awt.Component.dispatchEventImpl(Component.java:4706)
    at java.awt.Component.dispatchEvent(Component.java:4460)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
java.lang.NullPointerException
    at org.wholebrainproject.wbc.view.tangible.VolumeView.getVolumeDataInfo(VolumeView.java:129)
    at org.wholebrainproject.wbc.view.tangible.VolumeView.setupVolume(VolumeView.java:188)
    at org.wholebrainproject.wbc.view.View3D.setVolumes(View3D.java:923)
    at org.wholebrainproject.wbc.observers.ApplicationObserver3D$1VolumeSetupTask.call(ApplicationObserver3D.java:164)
    at com.jme.util.GameTask.invoke(GameTask.java:140)
    at com.jme.util.GameTaskQueue.execute(GameTaskQueue.java:111)
    at com.jmex.awt.lwjgl.LWJGLCanvas.paintGL(LWJGLCanvas.java:135)
    at org.lwjgl.opengl.AWTGLCanvas.paint(AWTGLCanvas.java:288)
    at sun.awt.RepaintArea.paintComponent(RepaintArea.java:248)
    at sun.awt.X11.XRepaintArea.paintComponent(XRepaintArea.java:56)
    at sun.awt.RepaintArea.paint(RepaintArea.java:224)
    at sun.awt.X11.XComponentPeer.handleEvent(XComponentPeer.java:695)
    at java.awt.Component.dispatchEventImpl(Component.java:4706)
    at java.awt.Component.dispatchEvent(Component.java:4460)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
java.lang.NullPointerException
    at org.wholebrainproject.wbc.view.tangible.VolumeView.getVolumeDataInfo(VolumeView.java:129)
    at org.wholebrainproject.wbc.view.tangible.VolumeView.setupVolume(VolumeView.java:188)
    at org.wholebrainproject.wbc.view.View3D.setVolumes(View3D.java:923)
    at org.wholebrainproject.wbc.observers.ApplicationObserver3D$1VolumeSetupTask.call(ApplicationObserver3D.java:164)
    at com.jme.util.GameTask.invoke(GameTask.java:140)
    at com.jme.util.GameTaskQueue.execute(GameTaskQueue.java:111)
    at com.jmex.awt.lwjgl.LWJGLCanvas.paintGL(LWJGLCanvas.java:135)
    at org.lwjgl.opengl.AWTGLCanvas.paint(AWTGLCanvas.java:288)
    at sun.awt.RepaintArea.paintComponent(RepaintArea.java:248)
    at sun.awt.X11.XRepaintArea.paintComponent(XRepaintArea.java:56)
    at sun.awt.RepaintArea.paint(RepaintArea.java:224)
    at sun.awt.X11.XComponentPeer.handleEvent(XComponentPeer.java:695)
    at java.awt.Component.dispatchEventImpl(Component.java:4706)
    at java.awt.Component.dispatchEvent(Component.java:4460)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

Original comment by caprea on 26 Jun 2010 at 1:25

GoogleCodeExporter commented 9 years ago 
Did the new client release solve this?

Original comment by stephen....@gmail.com on 12 Jul 2010 at 12:10

GoogleCodeExporter commented 9 years ago 
0.7.7 fixes

Original comment by caprea on 15 Jul 2010 at 12:00