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Unable to load Cells #515

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. Bring up WBC againsta data.wholebraincatalog.org
2. Select parent node for Cells in data tree to make them visible
3.

What is the expected output? What do you see instead?
Cells are not loaded in scene. 

Please use labels and text to provide additional information.

Original issue reported on code.google.com by piperfl...@gmail.com on 21 Jul 2010 at 9:43

GoogleCodeExporter commented 9 years ago 
Now that Dave has rebuilt prod, let's try this again and see if its still the 
case.

Original comment by stephen....@gmail.com on 22 Jul 2010 at 3:53

GoogleCodeExporter commented 9 years ago 
Cells still don't come up when running version 0.7.7.0. They do come up for 
0.7.7.7.

Original comment by piperfl...@gmail.com on 22 Jul 2010 at 5:47

GoogleCodeExporter commented 9 years ago 
The cells come up on my machine with the same configuration.  We're expanding 
the tests to other machines.  If others would like to report their experience, 
that would be great.

Original comment by stephen....@gmail.com on 22 Jul 2010 at 6:14

GoogleCodeExporter commented 9 years ago 
I tested in 3 different machines and cells don't load in any of these.

Original comment by piperfl...@gmail.com on 22 Jul 2010 at 6:19

GoogleCodeExporter commented 9 years ago 
Ok.  Chris; I think we need you to take a look and see what is going on.

Original comment by stephen....@gmail.com on 22 Jul 2010 at 6:25

GoogleCodeExporter commented 9 years ago

Original comment by stephen....@gmail.com on 22 Jul 2010 at 6:25

GoogleCodeExporter commented 9 years ago 
The following 'networks' are corrupt in some manner on the production data 
server. These are causing all cells to not be displayed.
Thalamocortial Network
RothmanEtAl_KoleEtAl_PyrCell
Granule Cell Layer

The other cell networks work (sejnowski, dentate gyrus, pyramidal) display fine 
if the other ones are not selected.

Original comment by caprea on 22 Jul 2010 at 9:41

GoogleCodeExporter commented 9 years ago 
Can you elaborate?

(1) Are the 3 faulty networks a result of content of data files or content of 
the db?

(2) Are these networks corrected on the server version on dev- and stage-?

If (1) and data files content, can I replace the files?
If (2), can we push v1.1.2 to prod?

Original comment by davlit0...@gmail.com on 22 Jul 2010 at 11:18

GoogleCodeExporter commented 9 years ago 
I don't think we can push latest version to production because there are some 
client/server incompatibilities. I have not yet figured out what's different 
about those networks, but they seem fine when connecting to other servers.

Right now my hypothesis is that there is a missing file.

WARNING: Estimated filesize is: 2KB (2788 B)
Jul 22, 2010 4:22:10 PM java.util.logging.LogManager$RootLogger log
WARNING: Estimated filesize is: 6KB (6303 B)
java.lang.ClassCastException: java.io.File cannot be cast to 
org.morphml.neuroml.schema.Level3Cell
    at org.wholebrainproject.wbc.tangible.neuronmorphology.NeuronMorphology.getData(NeuronMorphology.java:522)
    at org.wholebrainproject.wbc.tangible.neuronmorphology.NeuronMorphology.initializeCableIdToSegmentIdMap(NeuronMorphology.java:607)
    at org.wholebrainproject.wbc.tangible.neuronmorphology.NeuronMorphology.getCableIdToSegmentIdMap(NeuronMorphology.java:551)
    at org.wholebrainproject.wbc.tangible.neuronmorphology.NeuronMorphology.getPartCount(NeuronMorphology.java:597)
    at org.wholebrainproject.wbc.view.tangible.NeuronCloud.makeHDInstances(NeuronCloud.java:409)
    at org.wholebrainproject.wbc.view.tangible.NeuronCloud.setup(NeuronCloud.java:640)
    at org.wholebrainproject.wbc.view.tangible.NeuronCloud.addCloudInstances(NeuronCloud.java:826)
    at org.wholebrainproject.wbc.view.View3D.setCells(View3D.java:857)
    at org.wholebrainproject.wbc.observers.SceneViewObserver.reloadCells(SceneViewObserver.java:428)
    at org.wholebrainproject.wbc.observers.SceneViewObserver.buildOutstanding(SceneViewObserver.java:395)
    at org.wholebrainproject.wbc.view.View3D$TangibleViewMaker.run(View3D.java:199)
    at java.lang.Thread.run(Thread.java:619)
Jul 22, 2010 4:22:11 PM java.util.logging.LogManager$RootLogger log
WARNING: Finished creating meshes for the neuron cloud 1 ms.

Original comment by caprea on 22 Jul 2010 at 11:28

GoogleCodeExporter commented 9 years ago 
Turns out this is not a problem.  We had a miscommunication about which version 
we were talking about.  This problem does not exist on the 0.7.7.0 production 
link on the website.

Original comment by stephen....@gmail.com on 23 Jul 2010 at 1:26

GoogleCodeExporter commented 9 years ago 
The problem was related to the JNLP. Version 0.7.7.0 has a problem with 
resolving the address data.wholebraincatalog.org, the work-around is to specify 
the IP address of the server in the JNLP. We were fooled by using the developer 
version client of 0.7.7.0 which does not specify the IP address.

Original comment by caprea on 23 Jul 2010 at 1:29