can't show judiVector in jupyter notebook

[ziyiyin97]

I am now at version 3.0.1. This errors when doing

q

in a single cell in jupyter notebook (it works totally find in Julia's REPL in terminal) where q is a judiVector as source. Seems to be an error about something here https://github.com/slimgroup/JUDI.jl/blob/30fb30f90c09f8a3256a189f9134027af2dc93f8/src/TimeModeling/Types/abstract.jl#L12 any thought?

StackOverflowError:

Stacktrace:
     [1] make_typealias(x::Type)
       @ Base ./show.jl:562
     [2] show_typealias(io::IOBuffer, x::Type)
       @ Base ./show.jl:723
     [3] _show_type(io::IOBuffer, x::Type)
       @ Base ./show.jl:886
     [4] show(io::IOBuffer, x::Type)
       @ Base ./show.jl:881
     [5] show_typeparams(io::IOBuffer, env::Core.SimpleVector, orig::Core.SimpleVector, wheres::Vector{TypeVar})
       @ Base ./show.jl:640
     [6] show_datatype(io::IOBuffer, x::DataType, wheres::Vector{TypeVar})
       @ Base ./show.jl:1011
     [7] show_datatype
       @ ./show.jl:989 [inlined]
     [8] _show_type(io::IOBuffer, x::Type)
       @ Base ./show.jl:889
     [9] show(io::IOBuffer, x::Type)
       @ Base ./show.jl:881
    [10] print(io::IOBuffer, x::Type)
       @ Base ./strings/io.jl:35
    [11] print_to_string(xs::Type)
       @ Base ./strings/io.jl:144
    [12] string
       @ ./strings/io.jl:185 [inlined]
    [13] show(io::IOContext{IOBuffer}, ms::judiVector{Float32, Matrix{Float32}})
       @ JUDI ~/.julia/dev/JUDI/src/TimeModeling/Types/abstract.jl:12
    [14] sprint(f::Function, args::judiVector{Float32, Matrix{Float32}}; context::IOContext{IOBuffer}, sizehint::Int64)
       @ Base ./strings/io.jl:112
    [15] alignment(io::IOContext{IOBuffer}, x::judiVector{Float32, Matrix{Float32}})
       @ Base ./show.jl:2730
    [16] alignment(io::IOContext{IOBuffer}, X::AbstractVecOrMat, rows::Vector{Int64}, cols::Vector{Int64}, cols_if_complete::Int64, cols_otherwise::Int64, sep::Int64)
       @ Base ./arrayshow.jl:68
    [17] _print_matrix(io::IOContext{IOBuffer}, X::AbstractVecOrMat, pre::String, sep::String, post::String, hdots::String, vdots::String, ddots::String, hmod::Int64, vmod::Int64, rowsA::UnitRange{Int64}, colsA::UnitRange{Int64})
       @ Base ./arrayshow.jl:204
    [18] print_matrix(io::IOContext{IOBuffer}, X::judiVector{Float32, Matrix{Float32}}, pre::String, sep::String, post::String, hdots::String, vdots::String, ddots::String, hmod::Int64, vmod::Int64) (repeats 2 times)
       @ Base ./arrayshow.jl:169
    [19] print_array
       @ ./arrayshow.jl:355 [inlined]
    [20] show(io::IOContext{IOBuffer}, #unused#::MIME{Symbol("text/plain")}, X::judiVector{Float32, Matrix{Float32}})
       @ Base ./arrayshow.jl:396
    [21] show(io::IOContext{IOBuffer}, m::String, x::judiVector{Float32, Matrix{Float32}})
       @ Base.Multimedia ./multimedia.jl:111
    [22] sprint(::Function, ::String, ::Vararg{Any}; context::IOContext{IOBuffer}, sizehint::Int64)
       @ Base ./strings/io.jl:112
    [23] print_matrix_row(io::IOContext{IOBuffer}, X::AbstractVecOrMat, A::Vector{Tuple{Int64, Int64}}, i::Int64, cols::Vector{Int64}, sep::String)
       @ Base ./arrayshow.jl:106
    [24] _print_matrix(io::IOContext{IOBuffer}, X::AbstractVecOrMat, pre::String, sep::String, post::String, hdots::String, vdots::String, ddots::String, hmod::Int64, vmod::Int64, rowsA::UnitRange{Int64}, colsA::UnitRange{Int64})
       @ Base ./arrayshow.jl:210
--- the last 7 lines are repeated 1488 more times ---
 [10441] print_matrix(io::IOContext{IOBuffer}, X::judiVector{Float32, Matrix{Float32}}, pre::String, sep::String, post::String, hdots::String, vdots::String, ddots::String, hmod::Int64, vmod::Int64) (repeats 2 times)
       @ Base ./arrayshow.jl:169
 [10442] print_array
       @ ./arrayshow.jl:355 [inlined]
 [10443] show(io::IOContext{IOBuffer}, #unused#::MIME{Symbol("text/plain")}, X::judiVector{Float32, Matrix{Float32}})
       @ Base ./arrayshow.jl:396
 [10444] limitstringmime(mime::MIME{Symbol("text/plain")}, x::judiVector{Float32, Matrix{Float32}})
       @ IJulia ~/.julia/packages/IJulia/AQu2H/src/inline.jl:43
 [10445] display_mimestring
       @ ~/.julia/packages/IJulia/AQu2H/src/display.jl:71 [inlined]
 [10446] display_dict(x::judiVector{Float32, Matrix{Float32}})
       @ IJulia ~/.julia/packages/IJulia/AQu2H/src/display.jl:102
 [10447] #invokelatest#2
       @ ./essentials.jl:716 [inlined]
 [10448] invokelatest
       @ ./essentials.jl:714 [inlined]
 [10449] execute_request(socket::ZMQ.Socket, msg::IJulia.Msg)
       @ IJulia ~/.julia/packages/IJulia/AQu2H/src/execute_request.jl:112
 [10450] #invokelatest#2
       @ ./essentials.jl:716 [inlined]
 [10451] invokelatest
       @ ./essentials.jl:714 [inlined]
 [10452] eventloop(socket::ZMQ.Socket)
       @ IJulia ~/.julia/packages/IJulia/AQu2H/src/eventloop.jl:8

[mloubout]

show(io::IOContext{IOBuffer}, #unused#::MIME{Symbol("text/plain")}, X::judiVector{Float32, Matrix{Float32}})
       @ Base ./arrayshow.jl:396

Looks lik you are in Weave, and you can check in the doc's make.jl that need few extra overload for it. But they are ambiguous so would break code quality in JUDI so can't be added there.

[ziyiyin97]

I did install Weave but I didn't using Weave in the current notebook that is erroring.

[ziyiyin97]

So I need to uninstall Weave?

[mloubout]

No looks like is some weird path of show

[ziyiyin97]

I've double checked: show(q) still works but q itself doesn't work

[mloubout]

Looks like probably need to define

show(io::IO, ::MIME{Symbol("text/plain")}, ms::judiMulti

[ziyiyin97]

Like this?

show(io::IO, ::MIME{Symbol("text/plain")}, ms::JUDI.judiMultiSourceVector) = println(io, "$(typeof(ms)) with $(ms.nsrc) sources")
q

it throws the same error

[mloubout]

Where did you define it

[ziyiyin97]

adding to abstract.jl works

[mloubout]

Yes because Base.show is imported in JUDI you always have to import function you extens