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slowkoni / rfmix

RFMIX - Local Ancestry and Admixture Inference Version 2
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Program keeps crashing when generating simulation samples on RFMIX v2.03-r0 but not RFMIX v2.02-r1 #24

Open deven-n-vyas opened 4 years ago

deven-n-vyas commented 4 years ago

I am running RFMIX on our lab's server as well as the university's computing cluster. The former uses the older version RFMIX v2.02-r1 and the latter the newer RFMIX v2.03-r0

v2.02-r1 seems to work just fine, but v2.03-r0 keeps crashing when generating internal simulation samples.

Generating internal simulation samples... Warning: excessive genetic drift loss during simulated population generation. Reference panel is too unbalanced. Program may not exit simulation loop.

Is this is a bug, or has something changed between the two versions. They are using the exact same input files on both machines.

Bennouhan commented 3 years ago

I'm getting the same issue, happen to remember how you got past it or did you just go forward with v2.02?

squigzzz commented 1 year ago

I'm getting the same issue, going to try using v2.02-r1, and I will report back if that works. I am using the HGDP reference dataset, curious what reference set you all used ?