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slowkoni / rfmix

RFMIX - Local Ancestry and Admixture Inference Version 2
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Haplotype order #33

Open JiawenChenn opened 3 years ago

JiawenChenn commented 3 years ago

Hi,

I have been using RFmix for a while and it works really well. Just a quick question, in the output file, we will have samplename.1 and samplename.2 for haplotypes at one site. How does the result correspond to the original phased vcf file? If we have 0|1, does sample names.1 represents 0 and samplename.2 represents 1?

Thanks a lot for your help!!

mmcqui commented 2 years ago

I had the exact same question. Were you ever able to figure this out?