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slowkow / cellguide

🧭 Navigate single-cell RNA-seq datasets in your web browser.
https://cell.guide
GNU General Public License v3.0
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Launch Cellguide in Browser #2

Open siegelna opened 2 weeks ago

siegelna commented 2 weeks ago

Hi, I am trying to use cellguide to visualize seurat objects. I am able to launch cellguide in the browser but, as you can see at the bottom of the page, nothing gets displayed on my end. I'm not sure if this is user-error on my end or a bug so I am reaching out.  

Steps to reproduce

# file: environment.yml

name: cellbrowser
channels:
  - bioconda
dependencies:
  - ucsc-cell-browser=1.2.6
mamba env create -f environment.yml
mamba activate cellbrowser

https://github.com/slowkow/cellguide?tab=readme-ov-file#step-3-copy-cell-guide-files


curl -s https://codeload.github.com/slowkow/cellguide/tar.gz/master | tar xvz

https://cellbrowser.readthedocs.io/en/master/quick_start.html

curl -k https://cells.ucsc.edu/downloads/samples/mini.tgz | tar xvz
cd mini
cbBuild -o html 
command cp -rf ../cellguide-master/www/* html/
cbBuild -o html -p 8888

Nothing loads in the browser

image
siegelna commented 2 weeks ago

Update:

Version 1.2.2 is the earliest build that will launch. I've tested 0.7.15-1.1.1 and confirm all give error messages and fail to start the server.

See conda for versions: https://anaconda.org/bioconda/ucsc-cell-browser/files