How to get the result after running harmony?

slowkow / harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

https://portals.broadinstitute.org/harmony/

GNU General Public License v3.0

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Closed HelloWorldLTY closed 3 years ago

HelloWorldLTY commented 3 years ago

I cannot find the result after batch effect removal in python. How to get the data value after batch effect removal? Thanks

HelloWorldLTY commented 3 years ago

Solve. It is Z_corr. Sorry for my misunderstanding.

slowkow commented 3 years ago

Thanks for opening the issue!

I think the documentation could use some improvement, to help prevent any confusion for future users.