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slowkow / harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
https://portals.broadinstitute.org/harmony/
GNU General Public License v3.0
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feature request: #14

Closed dangeles closed 3 years ago

dangeles commented 3 years ago

Hey! Thank you so much for porting harmony into python -- it's super useful.

I had one feature request that I wanted to make, in case others found it useful: Is there any chance you could include support for multiple covariates? It would make harmonypy even more useful and powerful, but I haven't been able to find out whether this is already supported as is by the current program base.

Thank you again for this wonderful contribution! David

slowkow commented 3 years ago

Thanks for the question, David!

I believe that multiple covariates should be working OK starting with version 0.0.4. See this previous issue for details: https://github.com/slowkow/harmonypy/issues/4

Let me know if you run into any issues.

I am starting to get the hint that the documentation for harmonypy could use some improvement 🙂

dangeles commented 3 years ago

You are totally right. I tried it and it worked like a charm. Thank you for the prompt reply!