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slowkow / homerkit

Read HOMER motif analysis output in R.
GNU General Public License v2.0
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Issue with read_homer_output() #2

Closed chinanicole closed 6 years ago

chinanicole commented 6 years ago

Hi,

I'm having an issue where I get the following error when running read_homer_output():

Found 28 motif.tsv[.gz] files in pDecrease_output/homerResults
Reading 28 of them...
Found 28 motif*.info.html files in pDecrease_output/homerResults
Reading 28 of them...
The following named parsers don't match the column names:
# of Target Sequences with Motif(of 60), # of Background Sequences with Motif(of 490)

Not sure what's going on - it looks like those column names should be commented out? Thanks!

slowkow commented 6 years ago

Thanks for opening this issue and sharing the error 👍

You are right, those column names are no good. I just changed the code and it seems to work now.

Could I ask you to try reinstalling the latest GitHub version with devtools::install_github("slowkow/homerkit") and try again?

Thank you!

chinanicole commented 6 years ago

Looks good now! Thanks, and thanks for making this! Super helpful with the bulky HOMER output.