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slowkow / proxysnps

:bookmark: Get SNP proxies from the 1000 Genomes Project.
MIT License
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Window size #14

Open swvanderlaan opened 5 years ago

swvanderlaan commented 5 years ago

Hi,

Just for clarification: is the window size read like ± xxxx kb around the index variant?

Thanks!

Sander

slowkow commented 5 years ago

The window is in bp, not kbp. The default is 1e5 or 100,000 bp.

That means 50,000 upstream and 50,000 downstream.

https://github.com/slowkow/proxysnps/blob/08637c73ec92d7cc36eca9dbb1b44c9df6f69e0c/R/get_proxies.R#L20-L44