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slowkow / proxysnps

:bookmark: Get SNP proxies from the 1000 Genomes Project.
MIT License
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Incorrect URL for 1000 Genomes phase3 data #7

Closed sjfandrews closed 6 years ago

sjfandrews commented 6 years ago

Hi, the URL for the 1000 genomes phase 3 data hosted by Brian Browning has changed. Currently, the URL in get_vcf is set as

http://bochet.gcc.biostat.washington.edu/beagle/1000_Genomes_phase3_v5a/vcf.b37/chr16.1kg.phase3.v5a.vcf.gz

The correct URL is now (vcf.b37 -> b37.vcf)

http://bochet.gcc.biostat.washington.edu/beagle/1000_Genomes_phase3_v5a/b37.vcf/chr16.1kg.phase3.v5a.vcf.gz

Thanks Shea

slowkow commented 6 years ago

Thanks! We ran into this in issue #5 and I'm surprised to see that the URL changed again so soon.

I think it is time to stop hard-coding this URL... I will try to give some time to this package soon, but I have other priorities right now.

sjfandrews commented 6 years ago

Thanks, just confirming that the URL is now working again.