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smangul1 / MiCoP

MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
GNU General Public License v3.0
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Indices.zip impossible to download during setup #10

Closed Leob44 closed 2 years ago

Leob44 commented 2 years ago

Hello,

The tools appears to be outdated. I get this weird error when executing setup.sh:

Archive: indices.zip End-of-central-directory signature not found. Either this file is not a zipfile, or it constitutes one disk of a multi-part archive. In the latter case the central directory and zipfile comment will be found on the last disk(s) of this archive. unzip: cannot find zipfile directory in one of indices.zip or indices.zip.zip, and cannot find indices.zip.ZIP, period.

I tried downloading it manually but it seems it is not on google drive anymore (too heavy ? )

almicach commented 2 years ago

Hi, I have the same problem. Did you figure out how to solve it?

nlapier2 commented 2 years ago

Sorry about that -- looks like the workaround enabling wget from google drive is no longer working. I'll work on getting the file up on zenodo and update the link. In the meantime, if you are ok with downloading from the browser, you can use this link: https://drive.google.com/u/1/uc?id=1iYEC9xwXReCoxeXOFLwoW82tmbCt9QR7&export=download

nlapier2 commented 2 years ago

Update: the data is up on zenodo now. Please try the new setup.sh script.

Angel-Popa commented 1 year ago

Hi Nathan,

Thank you for the tool.

I kept having an error with the setup.py script. After reviewing the code and reading issue 1629 on the Zenodo GitHub page, I modified the script to include the Zenodo REST API, which avoids problems with wget, like:

#!/bin/bash
curl https://zenodo.org/record/6399965/files/indices.zip?download=1 --output indices.zip
mv indices.zip data/indices.zip
cd data
unzip indices.zip
rm indices.zip
cd ..