Open jakalssj3 opened 2 months ago
Hello. I tried using the tool. The sam files are generated properly, but in the second step of summarizing the abundances I always get an empty file. What can be the reason?
python /software/src/MiCoP/run-bwa.py sample_01.clean.fastq.gz --fungi --output sample_01.micop_fungi.sam python /software/src/MiCoP/compute-abundances.py --fungi sample_01.clean.micop_fungi.sam
And this is the entire content of abundances.txt file:
@@TAXID RANK TAXPATH TAXPATHSN PERCENTAGE
Hello. I tried using the tool. The sam files are generated properly, but in the second step of summarizing the abundances I always get an empty file. What can be the reason?
And this is the entire content of abundances.txt file: