search

smangul1 / ec

This project includes simulated and 'golden standard' datasets, software and scripts that we used to benchmark error correction tools
https://smangul1.github.io/ec/
1 stars 3 forks source link

how you are obtaining the ground true for each reads from simulated data #18

Closed smangul1 closed 7 years ago

smangul1 commented 7 years ago

Let's discuss next time we talk how you are obtaining the ground true for each reads from simulated data

mandricigor commented 7 years ago

Ground truth is obtained using the script

https://github.com/smangul1/ec/blob/master/scripts/ground_truth.py

smangul1 commented 7 years ago

Do you assume any difference with the reference is an error? Did you simulate SNPs together with errors?