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smangul1 / ec

This project includes simulated and 'golden standard' datasets, software and scripts that we used to benchmark error correction tools
https://smangul1.github.io/ec/
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Reproduce all the results #8

Open smangul1 opened 7 years ago

smangul1 commented 7 years ago

Let's use similar approach to make sure everybody will be able to reproduce the results from the paper http://ivory.idyll.org/blog/2014-our-paper-process.html https://macarthurlab.org/2016/03/17/reproduce-all-the-figures-a-users-guide-to-exac-part-2/

Any volunteers? It can be a team work!

smangul1 commented 7 years ago

Anybody interested in helping?

rlittman16 commented 7 years ago

I can help with it

smangul1 commented 7 years ago

Great Russell. Please read this paper and let's make a plan to make everything reproducible

http://ivory.idyll.org/blog/2014-our-paper-process.html https://macarthurlab.org/2016/03/17/reproduce-all-the-figures-a-users-guide-to-exac-part-2/

smangul1 commented 7 years ago

Please look here https://github.com/adamewing/bamsurgeon/

at Dockerfile

smangul1 commented 7 years ago

Let's look here as well. some good advice http://ivory.idyll.org/blog/2014-our-paper-process.html