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smangul1 / rop

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
https://github.com/smangul1/rop/wiki
GNU General Public License v3.0
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bug #109

Closed smangul1 closed 7 years ago

smangul1 commented 7 years ago

if i run

python rop.py --skipPreliminary --microbiome --qsub example/unmappedExampleFasta.fasta test --f

i get this error ERROR: Subprocess crashed. Traceback (most recent call last): File "rop.py", line 278, in if subprocess.Popen([cmd], shell=True).wait(): raise SubprocessError() rop_functions.SubprocessError

kahsieh commented 7 years ago

I was unable to reproduce the error using ROP v1.0.6. Have you checked the following?

smangul1 commented 7 years ago

Thanks Kevin! You are right that was insufficient disk space