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smangul1 / rop

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
https://github.com/smangul1/rop/wiki
GNU General Public License v3.0
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install.sh script not working #144

Closed BeckfordJay closed 4 years ago

BeckfordJay commented 5 years ago

I'm stuck with the installer. When I try to run the ./install.sh command from repository directory, it does not go through. When I try to edit the code to resolve these issues, I receive more issues further down the code such as these. Are there any simple fixes? I'm using bash + OSX if this is of any help.

screen shot 2019-02-20 at 5 53 51 pm screen shot 2019-02-20 at 10 01 10 pm screen shot 2019-02-20 at 10 01 49 pm
BeckfordJay commented 5 years ago

Bash + Homebrew + OSX***

kahsieh commented 5 years ago

Hi @BeckfordJay, unfortunately we don't support ROP on Mac shell because utilities such as readlink function differently than on Linux. It might be possible to run ROP (hackily) on Mac with the help GNU Coreutils, but we would recommend just running it with Linux.

BeckfordJay commented 5 years ago

I see. Thanks for the heads up!