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smangul1 / rop

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
https://github.com/smangul1/rop/wiki
GNU General Public License v3.0
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Installation aborts when downloading MetaPhlAn2 #146

Closed julianeweller closed 3 years ago

julianeweller commented 3 years ago

Hello, I'm trying to install ROP with running the ./install.sh, but it aborts at the stage of downloading MetaPhlAn2:

image

Linux version 4.15.0-136-generic Python 3.8.8 biopython 1.78

Any suggestions how to solve this issue?

kahsieh commented 3 years ago

It looks like MetaPhlAn2 changed its location from https://bitbucket.org/biobakery/metaphlan2 to https://github.com/biobakery/metaphlan2, and Miniconda changed its location from https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh to https://repo.anaconda.com/miniconda/Miniconda-latest-Linux-x86_64.sh. I can patch it over the weekend.

kahsieh commented 3 years ago

Patched! Thanks for the report.