Closed igordot closed 4 years ago
This repository is for the latest release of the gem-mapper (GEMv3). If you have any issue with the old binaries (GEMv2) don't hesitate to contact the developers by email (Paolo Ribeca paolo.ribeca@gmail.com and Santiago Marco Sola santiagomsola@gmail.com).
In this case, the old GEMv2 parses the whole line and there is no option to do otherwise. The easiest solution is to adapt the input mFASTA to remove trailing tags on the sequence name (i.e., leave ">chr1" and remove the rest).
Sorry for the inconvenience,
I am using the SourceForge binaries, since it seems
gem-mappability
is not available in the GitHub version. I tried to index a genome with contigs like:The old indexer parses those contig names as
chr1 AC
(notchr1
). Is there a way to resolve that?