search

smarco / gem3-mapper

GEM-Mapper v3
GNU General Public License v3.0
56 stars 17 forks source link

Unaligned reads? #25

Closed franrodalg closed 3 years ago

franrodalg commented 3 years ago

Hi everyone,

Just a quick question. Does gem3-mapped keep unaligned reads in the output bam files, or only aligned reads as kept (as bismark does, for instance).

Cheers! Fran

smarco commented 3 years ago

Hi,

Yes it does.

Best,