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smarco / gem3-mapper

GEM-Mapper v3
GNU General Public License v3.0
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gem-indexer GEM.System.Error::Signal raised (no=8) [errno=0,Success] #27

Closed alkurowska closed 3 years ago

alkurowska commented 3 years ago

Hello I am runing this command on my fasta file gem-indexer -i genome/Homo_sapiens-GRCh38.p13/Homo_sapiens-GRCh38.p13.fa \ -o Homo_sapiens_GRCh38 -threads 8

And I am getting the following error:

Loading module for GEM-Mapper GEM-Mapper 3.6.1 is now loaded 2021/9/4 15:08:19 -- [Inspecting MultiFASTA] 2021/9/4 15:08:39 -- 100% ... done [20.045 s] 2021/9/4 15:08:39 -- Inspected text 6176572855 characters (index_complement=yes). Requesting 5890 MB (encoded text) 2021/9/4 15:08:39 -- [Reading MultiFASTA] 2021/9/4 15:08:40 -- 100000000 bases parsed 2021/9/4 15:08:41 -- 200000000 bases parsed 2021/9/4 15:08:42 -- 300000000 bases parsed 2021/9/4 15:08:43 -- 400000000 bases parsed 2021/9/4 15:08:44 -- 500000000 bases parsed 2021/9/4 15:08:45 -- 600000000 bases parsed 2021/9/4 15:08:46 -- 700000000 bases parsed 2021/9/4 15:08:47 -- 800000000 bases parsed 2021/9/4 15:08:48 -- 900000000 bases parsed 2021/9/4 15:08:49 -- 1000000000 bases parsed 2021/9/4 15:08:50 -- 1100000000 bases parsed 2021/9/4 15:08:51 -- 1200000000 bases parsed 2021/9/4 15:08:52 -- 1300000000 bases parsed 2021/9/4 15:08:53 -- 1400000000 bases parsed 2021/9/4 15:08:54 -- 1500000000 bases parsed 2021/9/4 15:08:55 -- 1600000000 bases parsed 2021/9/4 15:08:56 -- 1700000000 bases parsed 2021/9/4 15:08:57 -- 1800000000 bases parsed 2021/9/4 15:08:58 -- 1900000000 bases parsed 2021/9/4 15:08:59 -- 2000000000 bases parsed 2021/9/4 15:09:00 -- 2100000000 bases parsed 2021/9/4 15:09:01 -- 2200000000 bases parsed 2021/9/4 15:09:02 -- 2300000000 bases parsed 2021/9/4 15:09:03 -- 2400000000 bases parsed 2021/9/4 15:09:04 -- 2500000000 bases parsed 2021/9/4 15:09:05 -- 2600000000 bases parsed 2021/9/4 15:09:06 -- 2700000000 bases parsed 2021/9/4 15:09:07 -- 2800000000 bases parsed 2021/9/4 15:09:08 -- 2900000000 bases parsed 2021/9/4 15:09:09 -- 3000000000 bases parsed 2021/9/4 15:09:10 -- 3100000000 bases parsed 2021/9/4 15:09:10 -- Total 3132404789 bases parsed ...done [30.864 s] 2021/9/4 15:09:10 -- [Generating Text (explicit Reverse-Complement)] 2021/9/4 15:09:15 -- 100% ... done [5.193 s] 2021/9/4 15:09:15 -- [Generating BWT Forward-Text] <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<

GEM.System.Error::Signal raised (no=8) [errno=0,Success]