Closed y9c closed 2 months ago
The library has some functions to process SAM files produced by RNA mappers. One of the gem-tools
goals was to facilitate the post-processing of SAM/MAP files. However, gem-tools
is a different component than the mapper itself gem-mapper
.
Let me know if this answers your question.
Thank you for the information.
The document does not show an argument for splicing mapping for RNA-seq data, but the code shows RNA-seq filtering step. I wonder if this tool is comparable with RNA-seq data?
Thank you.
https://github.com/smarco/gem3-mapper/blob/82cfcaa0b5ab0c09a94d48375b25883b9d31caf2/resources/gem-tools/tools/gt.filter.c#L63C3-L67