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smart-on-fhir
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cumulus-library
https://docs.smarthealthit.org/cumulus/library/
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Table infrastructure, condition refactor
#163
Closed
dogversioning
closed
8 months ago
dogversioning
commented
8 months ago
This PR makes the following changes:
Adds a schema parser class to databases
Per discussion, it's a simple first pass - it is not really database aware.
lots of *args **kwargs updates to support optionally passing a parser to a builder
Moved condition table (& some prerequisite queries) to a table builder
Condition table should now inspect the found schema and null columns it cant find
moved count_condition_month table to core counts builder
some light updates to medication counts, which wasn't actually being properly tested before
Checklist
[X] Consider if documentation (like in
docs/
) needs to be updated
[x] Consider if tests should be added
[X] Run pylint if you're making changes beyond adding studies
[X] Update template repo if there are changes to study configuration
This PR makes the following changes:
Checklist
docs/
) needs to be updated