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smcclatchy / mapping

Quantitative Trait Mapping Lesson
https://smcclatchy.github.io/mapping/
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create script for comparison of kinship methods for challenge #12

Open smcclatchy opened 5 years ago

smcclatchy commented 5 years ago

create a script of the following for people to copy and paste, then change lodcolumns to 2 for spleen and col 2 for spleen create challenge and provide url to script for copy-paste

this is for liver

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plot(out, map, lodcolumn=1, col=color[1], main=colnames(iron$pheno)[1], ylim=c(0, ymx*1.02))

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plot(out_pg, map, lodcolumn=1, col=color[2], add=TRUE)

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plot(out_pg_loco, map, lodcolumn=1, col=color[3], add=TRUE, lty=2)

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legend("topleft", lwd=2, col=color, c("H-K", "LMM", "LOCO"), bg="gray90", lty=c(1,1,2))

plot(out, lodcolumn="liver", map) plot(out, lodcolumn="liver", map, col="black", add=TRUE) plot(out_pg, lodcolumn="liver", map, col="red", add=TRUE) plot(out_pg_loco, lodcolumn="liver", map, col="yellow", add=TRUE)