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smcclatchy / spatial-transcriptomics

https://smcclatchy.github.io/spatial-transcriptomics/
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data preprocessing: remove 2 lines that align spots with tissue position #13

Open smcclatchy opened 2 months ago

dmgatti commented 2 months ago

In Data preprocessing, remove:

tissue_position <- tissue_position[Cells(raw_st),] stopifnot(rownames(tissue_position) == Cells(raw_st))

In Normalization, remove: stopifnot(all(Cells(filter_st) %in% rownames(spot_metadata))) spot_metadata <- spot_metadata[Cells(filter_st),]