smcclatchy / spatial-transcriptomics

https://smcclatchy.github.io/spatial-transcriptomics/
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Deconvolution episode: Create pre-processed files #6

Open dmgatti opened 3 months ago

dmgatti commented 3 months ago

In the"Loading scRNA-seq reference data" section, we have a large data wrangling block that can be removed if we preprocess the scRNASeq data. We should do the preliminary data wrangling so that students can read in single cell counts and metadata and focus on the lesson, not data wrangling.