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smdabdoub / kraken-biom

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
MIT License
47 stars 16 forks source link

add dockerfile to install options #14

Closed shaunchuah closed 3 years ago

shaunchuah commented 3 years ago

Thank you for providing this useful package.

I've created a simple Docker image of this tool for use in cloud orchestration eg. with Nextflow and thought I'll contribute the Dockerfile back to this repo (image built using python 3.6 and biom-format 2.1.10). This will allow anybody to build a docker image locally and run it interactively using exactly the same options as described in the docs.

smdabdoub commented 3 years ago

This is a great addition thanks! I'm getting back into this and have several updates, so great timing!