Get CHR & SNP POS using rs ids

smgogarten / GWASTools

Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis

https://bioconductor.org/packages/GWASTools

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Get CHR & SNP POS using rs ids #11

Closed Mahantesh-Biradar closed 3 years ago

Mahantesh-Biradar commented 3 years ago

I have a big list of SNP rs ids for which I would like to find the CHR no and the respective SNP position on hg38. Can you please suggest how I can use GWASTools for the same? Thanks in advance

smgogarten commented 3 years ago

GWASTools is not the right tool for this task. I suggest you look at Bioconductor annotation resources. There is a support page where you can go for help using these resources.