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smirarab / binning

Code for statistical binning and related scripts
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Dendropy 4.0 incompatability #1

Open hyphaltip opened 9 years ago

hyphaltip commented 9 years ago

Note that API seems to have changed in Dendropy.

I get this error when running with Dendropy-4.0.0 (which is default by easy_install) so installation binning/remove_edges_from_tree.py", line 38, in edges = tree.get_edge_set(filt) AttributeError: 'Tree' object has no attribute 'get_edge_set'

Instructions ought to specify the version should be 3.12 --- I tested and 3.12.3 works

smirarab commented 9 years ago

Thanks for the report. Fixed the documentation, but will keep this open until I get a chance and make this compatible with Dendropy 4.0.