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smirarab / binning

Code for statistical binning and related scripts
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'Tree' object has no attribute 'get_edge_set' #6

Closed BenjaminBlanchard closed 4 years ago

BenjaminBlanchard commented 4 years ago

Hello! When I enter this command:

$BINNING_HOME/makecommands.compatibility.sh ./genes_dir 50 ./pairwiseoutput iqtree_bootstrap.treefile

It starts running (e.g. generates ./pairwiseoutput directory) but only returns this output:

USAGE: directory support outdirectory filename Traceback (most recent call last): File "./binning-master/remove_edges_from_tree.py", line 38, in <module> edges = tree.get_edge_set(filt) AttributeError: 'Tree' object has no attribute 'get_edge_set'

Do you have any idea what the issue might be?

BenjaminBlanchard commented 4 years ago

Oh, just now saw that another user reported this as a Dendropy version issue - I thought I was using the earlier version but I guess not. Will fix that.