smirarab / pasta

PASTA (Practical Alignment using SATe and Transitivity)
GNU General Public License v3.0
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GINSI appears to be missing from binary bundle #44

Closed brantfaircloth closed 5 years ago

brantfaircloth commented 5 years ago

Hi Siavash,

Wasn't sure if the best place to post this was here or at the "tools" github page... regardless, it looks like the ginsi binary is missing from the sate tools repo/archive.

I've also had problems creating a valid configuration file to point pasta elsewhere to look for binaries - it appears the config header format that is expected is different from what is present in pastajob_temp_pasta_config.txt (e.g. the aligners need to have "aligner" in the header?).

brantfaircloth commented 5 years ago

Ok - my bad - disregard. I see that the symlink is created when you install w/ setup.py develop - which I was not doing (I was trying to install "normally" w/ setup.py install and also trying to create a new bioconda build for 1.8.5).