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smistad / FAST

A framework for high-performance medical image processing, neural network inference and visualization
https://fast.eriksmistad.no
BSD 2-Clause "Simplified" License
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Segmentation fault when trying to run a Qt executable #94

Closed normanius closed 6 years ago

normanius commented 6 years ago

For instance, when executing the viewer, I get the following message on the console:

INFO: Creating new QApp
INFO: Loaded configuration file: /Users/norman/workspace/dev/misc/fast-medimg/fast-git/build/fast_configuration.txt
INFO: Test data path: /Users/norman/workspace/dev/misc/fast-medimg/fast-git/data//
INFO: Kernel source path: /Users/norman/workspace/dev/misc/fast-medimg/fast-git/source/FAST/
INFO: Kernel binary path: /Users/norman/workspace/dev/misc/fast-medimg/fast-git/build/kernel_binaries/
INFO: Documentation path: /Users/norman/workspace/dev/misc/fast-medimg/fast-git/doc/
INFO: Pipeline path: /Users/norman/workspace/dev/misc/fast-medimg/fast-git/pipelines/
INFO: Creating new GL context for computation thread
INFO: QApp already exists..
INFO: Device manager initialize..
INFO: Initial GL context: 0x7fb83b84dc00
INFO: Initial GL share group: 0x7fb83cf00000
INFO: Found 1 OpenCL platforms.
INFO: 1 platforms selected for inspection.
INFO: Platform 0: Apple
INFO: This platform has 0 available devices in total
INFO: Looking for GPU devices only.
INFO: 1 selected.
INFO: Inspecting device 0 with the name Iris Pro
INFO: Initial GL context: 0x7fb83b84dc00
INFO: Initial GL share group: 0x7fb83cf00000
INFO: Device has OpenGL interop capability
INFO: The device was accepted.
INFO: A device-platform mismatch was detected.
INFO: The platform Apple was selected as the best platform.
INFO: A total of 1 devices were selected for the context from this platform:
/Users/norman/workspace/dev/misc/fast-medimg/fast-git/pipelines/cardiac_view_classification.fpl
/Users/norman/workspace/dev/misc/fast-medimg/fast-git/pipelines/dnn_left_ventricle_segmentation.fpl
/Users/norman/workspace/dev/misc/fast-medimg/fast-git/pipelines/image_renderer.fpl
asd
Finished viewer setup
[1]    59485 segmentation fault  ./bin/viewer

The crash report looks the following. Any ideas? All apps seem to crash for fast::View::initializeGL() 

Process:               viewer [59485]
Path:                  /Users/USER/*/viewer
Identifier:            viewer
Version:               0
Code Type:             X86-64 (Native)
Parent Process:        zsh [59397]
Responsible:           iTerm2 [364]
User ID:               501

Date/Time:             2017-11-08 16:45:25.050 +0100
OS Version:            Mac OS X 10.11.6 (15G1510)
Report Version:        11
Anonymous UUID:        D1CF50F7-2886-8A51-8DAD-F32E4E57B5F6

Sleep/Wake UUID:       57489E58-DB26-4643-A2A7-1AA259E59714

Time Awake Since Boot: 520000 seconds
Time Since Wake:       6100 seconds

System Integrity Protection: enabled

Crashed Thread:        0  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_BAD_ACCESS (SIGSEGV)
Exception Codes:       KERN_INVALID_ADDRESS at 0x0000000000000090

VM Regions Near 0x90:
--> 
    __TEXT                 0000000107e4a000-0000000107e5a000 [   64K] r-x/rwx SM=COW  /Users/USER/*

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0   libFAST.dylib                   0x0000000107fc6450 fast::View::initializeGL() + 688
1   org.qt-project.QtOpenGL         0x000000010811b1c6 QGLWidget::glInit() + 54
2   org.qt-project.QtOpenGL         0x000000010811add5 QGLWidget::resizeEvent(QResizeEvent*) + 85
3   org.qt-project.QtWidgets        0x00000001081caec1 QWidget::event(QEvent*) + 2193
4   org.qt-project.QtWidgets        0x000000010818aedd QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
5   org.qt-project.QtWidgets        0x000000010818d822 QApplication::notify(QObject*, QEvent*) + 5906
6   libFAST.dylib                   0x0000000107fc0dc5 fast::FASTApplication::notify(QObject*, QEvent*) + 21
7   org.qt-project.QtCore           0x0000000108ff2aa4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 164
8   org.qt-project.QtWidgets        0x00000001081c39a3 QWidgetPrivate::sendPendingMoveAndResizeEvents(bool, bool) + 275
9   org.qt-project.QtWidgets        0x00000001081c964a QWidgetPrivate::show_helper() + 42
10  org.qt-project.QtWidgets        0x00000001081ca3bc QWidget::setVisible(bool) + 956
11  org.qt-project.QtWidgets        0x00000001081c99b3 QWidgetPrivate::showChildren(bool) + 275
12  org.qt-project.QtWidgets        0x00000001081c966c QWidgetPrivate::show_helper() + 76
13  org.qt-project.QtWidgets        0x00000001081ca3bc QWidget::setVisible(bool) + 956
14  libFAST.dylib                   0x0000000107fc0019 fast::Window::start() + 169
15  viewer                          0x0000000107e4e199 main + 41
16  libdyld.dylib                   0x00007fff9454a5ad start + 1

Thread 1:
0   libsystem_kernel.dylib          0x00007fff95e875e2 __workq_kernreturn + 10
1   libsystem_pthread.dylib         0x00007fff97332578 _pthread_wqthread + 1283
2   libsystem_pthread.dylib         0x00007fff97330341 start_wqthread + 13

Thread 2:: Dispatch queue: com.apple.libdispatch-manager
0   libsystem_kernel.dylib          0x00007fff95e87efa kevent_qos + 10
1   libdispatch.dylib               0x00007fff8bbeb165 _dispatch_mgr_invoke + 216
2   libdispatch.dylib               0x00007fff8bbeadcd _dispatch_mgr_thread + 52

Thread 3:
0   libsystem_kernel.dylib          0x00007fff95e875e2 __workq_kernreturn + 10
1   libsystem_pthread.dylib         0x00007fff97332578 _pthread_wqthread + 1283
2   libsystem_pthread.dylib         0x00007fff97330341 start_wqthread + 13

Thread 4:
0   libsystem_kernel.dylib          0x00007fff95e875e2 __workq_kernreturn + 10
1   libsystem_pthread.dylib         0x00007fff97332578 _pthread_wqthread + 1283
2   libsystem_pthread.dylib         0x00007fff97330341 start_wqthread + 13

Thread 5:
0   libsystem_kernel.dylib          0x00007fff95e875e2 __workq_kernreturn + 10
1   libsystem_pthread.dylib         0x00007fff97332578 _pthread_wqthread + 1283
2   libsystem_pthread.dylib         0x00007fff97330341 start_wqthread + 13

Thread 6:
0   libsystem_kernel.dylib          0x00007fff95e875e2 __workq_kernreturn + 10
1   libsystem_pthread.dylib         0x00007fff97332578 _pthread_wqthread + 1283
2   libsystem_pthread.dylib         0x00007fff97330341 start_wqthread + 13

Thread 7:
0   libsystem_kernel.dylib          0x00007fff95e875e2 __workq_kernreturn + 10
1   libsystem_pthread.dylib         0x00007fff97332578 _pthread_wqthread + 1283
2   libsystem_pthread.dylib         0x00007fff97330341 start_wqthread + 13

Thread 8:
0   libsystem_kernel.dylib          0x00007fff95e875e2 __workq_kernreturn + 10
1   libsystem_pthread.dylib         0x00007fff97332578 _pthread_wqthread + 1283
2   libsystem_pthread.dylib         0x00007fff97330341 start_wqthread + 13

Thread 9:
0   libsystem_kernel.dylib          0x00007fff95e875e2 __workq_kernreturn + 10
1   libsystem_pthread.dylib         0x00007fff97332578 _pthread_wqthread + 1283
2   libsystem_pthread.dylib         0x00007fff97330341 start_wqthread + 13

Thread 10:

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x00007fb83b853508  rcx: 0x0000000000000002  rdx: 0x0000000000000000
  rdi: 0x0000000000000001  rsi: 0x00007fb83b853508  rbp: 0x00007fff57db4a40  rsp: 0x00007fff57db4130
   r8: 0x0000000000000006   r9: 0x00000000ffffff00  r10: 0x0000000108d2a401  r11: 0x0000000108b9e750
  r12: 0x00007fb83b853200  r13: 0x9c00cd0040e7b4e7  r14: 0x00007fb83ad3eae0  r15: 0x00007fb83afce410
  rip: 0x0000000107fc6450  rfl: 0x0000000000010206  cr2: 0x0000000000000090

Logical CPU:     0
Error Code:      0x00000004
Trap Number:     14

Binary Images:
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    0x7fff9b4bb000 -     0x7fff9b4c0ff3  libunwind.dylib (35.3) <F6EB48E5-4D12-359A-AB54-C937FBBE9043> /usr/lib/system/libunwind.dylib
    0x7fff9b4c1000 -     0x7fff9b4ccfff  com.apple.CrashReporterSupport (10.11 - 718) <05892B57-F2CD-3C84-B984-0417F6B361DB> /System/Library/PrivateFrameworks/CrashReporterSupport.framework/Versions/A/CrashReporterSupport
    0x7fff9b54b000 -     0x7fff9b55bfff  libbsm.0.dylib (34) <7E14504C-A8B0-3574-B6EB-5D5FABC72926> /usr/lib/libbsm.0.dylib
    0x7fff9b55c000 -     0x7fff9b561fff  com.apple.TCC (1.0 - 1) <F5EEB2D3-9517-3975-97BE-22CB8E11B8A3> /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
    0x7fff9b562000 -     0x7fff9b56bfff  com.apple.icloud.FindMyDevice (1.0 - 1) <B9C741F2-6FAC-3BA7-B6E0-9A910C6E8D4E> /System/Library/PrivateFrameworks/FindMyDevice.framework/Versions/A/FindMyDevice
    0x7fff9b605000 -     0x7fff9b670ff7  com.apple.framework.CoreWLAN (11.0 - 1101.20) <3B35C543-7FCE-333F-80C1-432FA41DDCDE> /System/Library/Frameworks/CoreWLAN.framework/Versions/A/CoreWLAN
    0x7fff9b693000 -     0x7fff9b707ff7  com.apple.Heimdal (4.0 - 2.0) <5D365381-8B5E-3259-8867-FC4A7D307BDE> /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
    0x7fff9b771000 -     0x7fff9ba56ffb  com.apple.CoreServices.CarbonCore (1136.2 - 1136.2) <2DBAFC9A-6CD6-351D-B1F4-87D81AA6D640> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
    0x7fff9bb0e000 -     0x7fff9bb9bdd7  com.apple.AppleJPEG (1.0 - 1) <BF7EDBDB-A52D-37F7-BDE4-EAD49310D7A9> /System/Library/PrivateFrameworks/AppleJPEG.framework/Versions/A/AppleJPEG
    0x7fff9bb9c000 -     0x7fff9bbaefff  libsasl2.2.dylib (209) <11C7D200-0CA5-30F4-A19A-178CA81D48FE> /usr/lib/libsasl2.2.dylib
    0x7fff9bbc0000 -     0x7fff9bbc2ff7  com.apple.securityhi (9.0 - 55006) <AC151C58-A7AD-3ECF-B15D-5E09FF94FC23> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
    0x7fff9bbc3000 -     0x7fff9bbc5fff  libCVMSPluginSupport.dylib (12.1) <20BA72AF-C7C5-3551-8F59-E1AED5FC69F0> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
    0x7fff9bbc6000 -     0x7fff9bbc8fff  libCGXType.A.dylib (970) <A931200A-B248-39EF-8A8B-311D881BE372> /System/Library/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGXType.A.dylib
    0x7fff9bbc9000 -     0x7fff9bbcafff  com.apple.TrustEvaluationAgent (2.0 - 25) <0239494E-FEFE-39BC-9FC7-E251BA5128F1> /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
    0x7fff9bc2f000 -     0x7fff9bc31fff  com.apple.loginsupport (1.0 - 1) <9B2F5F9B-ED38-313F-B798-D2B667BCD6B5> /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
    0x7fff9bd96000 -     0x7fff9bdc7fff  com.apple.GSS (4.0 - 2.0) <B490333A-3B3E-397A-AD75-68846E9A9140> /System/Library/Frameworks/GSS.framework/Versions/A/GSS
    0x7fff9be78000 -     0x7fff9c1ccfff  com.apple.Foundation (6.9 - 1259.22) <C83D734C-6885-3549-80FE-70DEB04318D5> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
    0x7fff9c203000 -     0x7fff9c261fff  com.apple.CoreServices.OSServices (728.13 - 728.13) <477EA3F9-D13E-3D83-ABAD-4DC7DB134CF0> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
    0x7fff9c262000 -     0x7fff9c65efff  libLAPACK.dylib (1162.2) <987E42B0-5108-3065-87F0-9DF7616A8A06> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
    0x7fff9c67c000 -     0x7fff9c762ff7  libcrypto.0.9.8.dylib (59.60.1) <D68067AD-D1E0-3196-9796-51BE9B969C8E> /usr/lib/libcrypto.0.9.8.dylib
    0x7fff9c933000 -     0x7fff9c935ffb  libutil.dylib (43) <4C9BFE8B-563B-3EEA-A323-8F4F14E0A46C> /usr/lib/libutil.dylib
    0x7fff9c93c000 -     0x7fff9caa3fff  libBLAS.dylib (1162.2) <A1398FE0-39D2-33EA-9A0F-B2644EEA29A0> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
    0x7fff9caa4000 -     0x7fff9cc30ff7  libGLProgrammability.dylib (12.1) <6D4C193C-5F7B-3E82-81D9-D14D25BBD962> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
    0x7fff9cd6b000 -     0x7fff9cd8ffff  com.apple.MultitouchSupport.framework (304.12 - 304.12) <598A8689-E97E-3C8D-AACD-8A0EB1956CA6> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
    0x7fff9cd90000 -     0x7fff9cd95ff7  libheimdal-asn1.dylib (453.40.10) <981DE40B-FA16-36F7-BE92-8C8A115D6CD9> /usr/lib/libheimdal-asn1.dylib
    0x7fff9cdec000 -     0x7fff9cefaff3  com.apple.desktopservices (1.10.3 - 1.10.3) <3A6906D4-C0B8-30D1-B589-0466E5E42B69> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
    0x7fff9d039000 -     0x7fff9d10fffb  com.apple.DiskImagesFramework (10.11.4 - 417.4) <FB30D069-648F-3FB2-AA55-FC603606C49E> /System/Library/PrivateFrameworks/DiskImages.framework/Versions/A/DiskImages
    0x7fff9d161000 -     0x7fff9d1d8feb  libcorecrypto.dylib (335.50.1) <B5C05FD7-A540-345A-87BF-8E41848A3C17> /usr/lib/system/libcorecrypto.dylib
    0x7fff9d1d9000 -     0x7fff9d247ff7  com.apple.ApplicationServices.ATS (377 - 394.4) <CB64C2B7-828A-3C4C-8F3C-72B78630CD94> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
    0x7fff9d940000 -     0x7fff9d947ff7  libcompiler_rt.dylib (62) <A13ECF69-F59F-38AE-8609-7B731450FBCD> /usr/lib/system/libcompiler_rt.dylib
    0x7fff9d948000 -     0x7fff9d950fff  com.apple.CoreServices.FSEvents (1223.10.1 - 1223.10.1) <7F5B7A23-BC1D-3FA9-A9B8-D534F1E1979A> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/FSEvents.framework/Versions/A/FSEvents
    0x7fff9d951000 -     0x7fff9d952fff  libsystem_blocks.dylib (65) <1244D9D5-F6AA-35BB-B307-86851C24B8E5> /usr/lib/system/libsystem_blocks.dylib
    0x7fff9d953000 -     0x7fff9d97cfff  com.apple.ProtectedCloudStorage (1.0 - 1) <7436B2B3-943A-3500-B099-80F133B3E002> /System/Library/PrivateFrameworks/ProtectedCloudStorage.framework/Versions/A/ProtectedCloudStorage
    0x7fff9d9ae000 -     0x7fff9d9f3ff7  com.apple.coreservices.SharedFileList (24.4 - 24.5) <1D2AD77B-778F-3253-A295-3D0A32A8121C> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList
    0x7fff9dbdb000 -     0x7fff9dbdffff  libGIF.dylib (1461) <161A59BF-6311-3542-A89F-E96AFC76C536> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
    0x7fff9dbe7000 -     0x7fff9dc2cff3  libFontRegistry.dylib (155.2) <A70DD497-35F3-34DA-9C19-F4B90080E961> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib
    0x7fff9dc2d000 -     0x7fff9dc80ff7  libc++.1.dylib (120.1) <8FC3D139-8055-3498-9AC5-6467CB7F4D14> /usr/lib/libc++.1.dylib
    0x7fff9dc81000 -     0x7fff9dc83ff7  libquarantine.dylib (80) <B3B7B630-9012-3DA3-9458-5C009625E606> /usr/lib/system/libquarantine.dylib
    0x7fff9dc84000 -     0x7fff9dc93ffb  com.apple.LangAnalysis (1.7.0 - 1.7.0) <18D21123-A3E7-3851-974A-08E5D4540475> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
    0x7fff9ddb1000 -     0x7fff9ddb1fff  com.apple.ApplicationServices (48 - 48) <ADD57D3A-142F-3EF5-BFD8-EACD82164884> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
    0x7fff9ddb2000 -     0x7fff9dddbffb  libRIP.A.dylib (970) <BA17C96B-83CC-3835-8AFD-CB5A69D3D26F> /System/Library/Frameworks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
    0x7fff9dddc000 -     0x7fff9de96fff  com.apple.DiscRecording (9.0.1 - 9010.4.3) <540853B2-B123-3560-8023-C92EE229051A> /System/Library/Frameworks/DiscRecording.framework/Versions/A/DiscRecording
    0x7fff9de97000 -     0x7fff9de98ff3  com.apple.print.framework.Print (10.0 - 266) <3E85F70C-D7D4-34E1-B88A-C1F503F99CDA> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
    0x7fff9def3000 -     0x7fff9defcff3  libsystem_notify.dylib (150.40.1) <D48BDE34-0F7E-34CA-A0FF-C578E39987CC> /usr/lib/system/libsystem_notify.dylib
    0x7fff9defd000 -     0x7fff9dfecff7  libxml2.2.dylib (29.13) <1C510151-06AE-322B-A725-79C91EF79E1C> /usr/lib/libxml2.2.dylib
    0x7fff9e850000 -     0x7fff9ea71ff7  com.apple.CoreImage (11.4.0 - 366.4.20) <7721BA55-A10E-3425-8392-C5D7C510EAAB> /System/Library/Frameworks/CoreImage.framework/Versions/A/CoreImage
    0x7fff9eaf6000 -     0x7fff9eb18fff  com.apple.IconServices (68.1 - 68.1) <CDEEDBE6-F53B-3BA1-82D4-23BCA3DD8949> /System/Library/PrivateFrameworks/IconServices.framework/Versions/A/IconServices
    0x7fff9eb67000 -     0x7fff9eba1ff7  com.apple.DebugSymbols (132 - 132) <23A42C53-B941-3871-9EE2-4C87A46005B5> /System/Library/PrivateFrameworks/DebugSymbols.framework/Versions/A/DebugSymbols
    0x7fff9ebbc000 -     0x7fff9ebc1ff7  libmacho.dylib (875.1) <318264FA-58F1-39D8-8285-1F6254EE410E> /usr/lib/system/libmacho.dylib
    0x7fff9ebc2000 -     0x7fff9ed68ff7  com.apple.audio.toolbox.AudioToolbox (1.13 - 1.13) <370E95BC-956C-3962-86CC-0A14CF6A0389> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
    0x7fff9eecd000 -     0x7fff9effaff3  com.apple.CoreText (352.0 - 494.13) <143887ED-1AB1-3C62-AC65-4F13E26B6D7C> /System/Library/Frameworks/CoreText.framework/Versions/A/CoreText
    0x7fff9effb000 -     0x7fff9f01ffff  libJPEG.dylib (1461) <97CF2E14-E83D-3C30-9678-26DD1A9467C2> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
    0x7fff9f020000 -     0x7fff9f07efff  com.apple.SystemConfiguration (1.14 - 1.14) <ACAEDA14-FAA0-3F14-B476-DE492A52D383> /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
    0x7fff9f08c000 -     0x7fff9f09ffff  com.apple.CoreBluetooth (1.0 - 1) <E54CA9A2-A5C6-30C5-9D6E-8472DBA9371E> /System/Library/Frameworks/CoreBluetooth.framework/Versions/A/CoreBluetooth
    0x7fff9f0a0000 -     0x7fff9f0efff7  com.apple.opencl (2.7.0 - 2.7.0) <DAEC71D4-E0E7-3E24-BB44-C977A798C575> /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
    0x7fff9f150000 -     0x7fff9f5c6fff  com.apple.CoreFoundation (6.9 - 1259.11) <B8056BE3-151B-3003-91C9-6720CF04937B> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
    0x7fff9fa15000 -     0x7fff9fab9fff  com.apple.Bluetooth (4.4.6 - 4.4.6f1) <FFD72A25-3213-3857-9B4F-DD674F0078F0> /System/Library/Frameworks/IOBluetooth.framework/Versions/A/IOBluetooth
    0x7fff9faba000 -     0x7fff9fc38fff  com.apple.UIFoundation (1.0 - 436.1) <AABB5267-E7B7-3D75-B051-E665BDA8DEF4> /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
    0x7fff9fc8a000 -     0x7fff9fcdffff  com.apple.AE (701 - 701) <AD492742-F884-386B-A450-FAC281B9FFA4> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
    0x7fff9fce0000 -     0x7fffa0f29ff3  com.apple.CoreGraphics (1.600.0 - 960.7) <FFB90E5E-F8FA-326C-8EF2-F809F9A58830> /System/Library/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
    0x7fffa0f66000 -     0x7fffa0f91ffb  libarchive.2.dylib (33.20.2.1.1) <BC764A1E-573A-3D95-A3CC-1758935ADC56> /usr/lib/libarchive.2.dylib
    0x7fffa1041000 -     0x7fffa1043fff  com.apple.EFILogin (2.0 - 2) <38150198-DD7F-3C73-BCAA-C74BB376393A> /System/Library/PrivateFrameworks/EFILogin.framework/Versions/A/EFILogin
    0x7fffa117b000 -     0x7fffa117cfff  liblangid.dylib (122) <9CC4F0D1-5C51-3B69-BC8F-EE3A51FD0822> /usr/lib/liblangid.dylib
    0x7fffa117d000 -     0x7fffa117dfff  com.apple.CoreServices (728.13 - 728.13) <CFE3EE73-A3F5-3824-9210-0790C07120F3> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
    0x7fffa117e000 -     0x7fffa11cffff  com.apple.audio.CoreAudio (4.3.0 - 4.3.0) <EA7D4F3B-062B-3C81-A98C-C89264D00D48> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
    0x7fffa11d0000 -     0x7fffa1277fff  com.apple.LanguageModeling (1.0 - 1) <58C18A47-BDE7-3CBE-81C0-797029D170A1> /System/Library/PrivateFrameworks/LanguageModeling.framework/Versions/A/LanguageModeling
    0x7fffa16bf000 -     0x7fffa16c8ff7  com.apple.CommonAuth (4.0 - 2.0) <4B8673E1-3697-3FE2-8D30-AC7AC5D4F8BF> /System/Library/PrivateFrameworks/CommonAuth.framework/Versions/A/CommonAuth
    0x7fffa16c9000 -     0x7fffa16e0ff7  libsystem_coretls.dylib (83.40.5) <C90DAE38-4082-381C-A185-2A6A8B677628> /usr/lib/system/libsystem_coretls.dylib
    0x7fffa16e4000 -     0x7fffa16f2fff  com.apple.opengl (12.1.0 - 12.1.0) <12EBDE6A-2F44-3429-8337-2BB36870BFD8> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
    0x7fffa1700000 -     0x7fffa173afff  com.apple.QD (3.12 - 302) <0FE53180-2895-3D14-A1E7-F82DE1D106E1> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
    0x7fffa1744000 -     0x7fffa1744fff  libmetal_timestamp.dylib (600.0.44.2) <DEEA1127-7A5D-3EF2-A4B2-AE125CBA5DB5> /System/Library/PrivateFrameworks/GPUCompiler.framework/libmetal_timestamp.dylib
    0x7fffa17b6000 -     0x7fffa17c1fff  libkxld.dylib (3248.60.11.5.3) <B6A73C46-FEF3-390A-A816-89F1D35B3D53> /usr/lib/system/libkxld.dylib
    0x7fffa17c2000 -     0x7fffa1828ff7  libsystem_network.dylib (583.50.1) <B52DAB73-92DC-3DA7-B9F4-B899D66445C1> /usr/lib/system/libsystem_network.dylib
    0x7fffa19be000 -     0x7fffa19e0ff7  com.apple.Sharing (442.13.6 - 442.13.6) <DDD2811C-6ECB-32F2-8EE1-69BF9657B4A8> /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing
    0x7fffa19e7000 -     0x7fffa19ebfff  libcache.dylib (75) <9548AAE9-2AB7-3525-9ECE-A2A7C4688447> /usr/lib/system/libcache.dylib
    0x7fffa19ec000 -     0x7fffa19eefff  libsystem_coreservices.dylib (19.2) <1B3F5AFC-FFCD-3ECB-8B9A-5538366FB20D> /usr/lib/system/libsystem_coreservices.dylib
    0x7fffa19ef000 -     0x7fffa1a0eff7  com.apple.framework.Apple80211 (11.0 - 1121.34.2) <90477FAE-B835-3931-80FB-FDFF02B21D9D> /System/Library/PrivateFrameworks/Apple80211.framework/Versions/A/Apple80211
    0x7fffa1a13000 -     0x7fffa1a15ff7  libsystem_configuration.dylib (802.40.13) <3DEB7DF9-6804-37E1-BC83-0166882FF0FF> /usr/lib/system/libsystem_configuration.dylib
    0x7fffa1a9c000 -     0x7fffa1aa0fff  libpam.2.dylib (20) <CFCD19BD-87BC-3F2B-BB1C-4C23E8E55F1A> /usr/lib/libpam.2.dylib
    0x7fffa1b77000 -     0x7fffa1b88ff7  libsystem_trace.dylib (201.10.3) <E9311C03-9E61-3B13-AF3F-A64956FFF269> /usr/lib/system/libsystem_trace.dylib
    0x7fffa1b89000 -     0x7fffa1e7efff  com.apple.HIToolbox (2.1.1 - 807.2) <36413C45-36AF-34EF-9C0E-F18B31D1E565> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox

External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 1
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 20166361
    thread_create: 0
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=253.2M resident=0K(0%) swapped_out_or_unallocated=253.2M(100%)
Writable regions: Total=188.0M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=188.0M(100%)

                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Accelerate.framework               128K        2 
Activity Tracing                  2048K        2 
CG backing stores                 1328K        5 
CG image                           296K        6 
CG shared images                   464K       13 
CoreAnimation                       40K        7 
CoreUI image data                  376K        4 
CoreUI image file                  192K        4 
Dispatch continuations            16.0M        2 
IOKit                             14.5M       21 
Kernel Alloc Once                    8K        3 
MALLOC                           124.0M       31 
MALLOC guard page                   32K        7 
OpenCL                               8K        2 
STACK GUARD                       56.0M       11 
Stack                             12.1M       11 
Stack (reserved)                   520K        2         reserved VM address space (unallocated)
Stack Guard                          4K        2 
VM_ALLOCATE                        304K        8 
__DATA                            18.8M      238 
__GLSLBUILTINS                    2588K        2 
__IMAGE                            528K        2 
__LINKEDIT                        98.5M       33 
__TEXT                           154.8M      241 
__UNICODE                          552K        2 
mapped file                      984.2M      123 
shared memory                     16.8M       13 
===========                     =======  ======= 
TOTAL                              1.5G      770 
TOTAL, minus reserved VM space     1.5G      770 

Model: MacBookPro11,4, BootROM MBP114.0172.B16, 4 processors, Intel Core i7, 2.8 GHz, 16 GB, SMC 2.29f24
Graphics: Intel Iris Pro, Intel Iris Pro, Built-In
Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x802C, 0x31364B544631473634485A2D314736453120
Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x802C, 0x31364B544631473634485A2D314736453120
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x152), Broadcom BCM43xx 1.0 (7.21.95.175.1a6)
Bluetooth: Version 4.4.6f1 17910, 3 services, 27 devices, 1 incoming serial ports
Network Service: Thunderbolt Ethernet, Ethernet, en5
PCI Card: Apple 57762-A0, Ethernet Controller, Thunderbolt@195,0,0
Serial ATA Device: APPLE SSD SM1024G, 1 TB
USB Device: USB 3.0 Bus
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 27.1
Thunderbolt Device: Thunderbolt to Gigabit Ethernet Adapter, Apple Inc., 3, 5.5
normanius commented 6 years ago

Some further details about the problem. First, I am working with FAST revision 7ae4987. I am currently using Qt 5.7.0 - as a next step I will check if the problem still occurs for newer versions of Qt.

OpenGL 3.3 is fully supported on my system, according to OpenGL Extensions Viewer app: All tests up to OpenGL 4.1 pass successfully.

Further, I found that the problem occurs in View::initializeGL() (line 353), when trying to generate the framebuffer:

fun->glGenFramebuffers(1,&fbo);
smistad commented 6 years ago

Thanks for the issue report. The system should build and download automatically Qt 5.8 not 5.7. Have you tried FAST version 1.2 release for mac? https://github.com/smistad/FAST/releases/tag/v1.2.0

Does any of the other executables work, or do you get the same error?

normanius commented 6 years ago

Alright, this was not clear. I was working on master branch. Maybe add this to the instructions. The segfault described above, as well as the other issue #93 I reported were not present with v1.2.0. Good job :)

The viewer app starts (although I was not able to see anything) properly.

However, now testFAST fails with the errors below, and the airwaySegmentation and lungSegmentation examples crash for the same reasons. Shall I create another issue or do you immediately see what the problem is? I downloaded the test data.

...
INFO: Max position found at 255 179 688 with G: 5.54136e-14
INFO: Max position found at 254 180 687 with G: 5.53974e-14
INFO: Max position found at 255 180 688 with G: 5.53902e-14
INFO: Max position found at 254 181 687 with G: 5.53749e-14
INFO: Max position found at 255 181 687 with G: 5.53277e-14
INFO: Max position found at 255 176 687 with G: 4.32711e-14
INFO: Max position found at 255 177 687 with G: 1.22134e-14
INFO: Max position found at -1  0  0 with G: 0
INFO: QApp already exists..
ERROR: OpenCL exception caught in Qt event handler clEnqueueNDRangeKernel(Memory object allocation failure)
ERROR: FAST exception caught in Qt event handler Could not find output data for port 0 in SurfaceExtraction
INFO: Trying to start computation thread
INFO: Computation thread started

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
testFAST is a Catch v1.5.9 host application.
Run with -? for options

-------------------------------------------------------------------------------
Airway segmentation
-------------------------------------------------------------------------------
../source/FAST/Algorithms/AirwaySegmentation/airwaySegmentationTests.cpp:49
...............................................................................

../source/FAST/Algorithms/AirwaySegmentation/airwaySegmentationTests.cpp:49: FAILED:
due to a fatal error condition:
  SIGSEGV - Segmentation violation signal

===============================================================================
test cases: 1 | 1 failed
assertions: 1 | 1 failed
smistad commented 6 years ago

The applications airwaySegmentation and lungSegmentation run the airway segmentation algorithm, and testFAST has a test for the airway segmentation algorithm. This algorithm uses a lot of memory.

ERROR: OpenCL exception caught in Qt event handler clEnqueueNDRangeKernel(Memory object allocation failure)

This basically means that your device has run out of memory. It is not so easy to know how much memory is available and used on the GPU, therefore it is hard to make mechanisms that detect and report these errors instead of simply crashing.

normanius commented 6 years ago

True, it seems to be a memory issue. Images of size 512x512x831x16bit (~415MB) seem to be working fine, while I get the segfaults for volume images with dimension 1024x1024x1024x16bit (=2048MB).

This behaviour is consistent with the specs of my system: I work with a Mac Book Pro (Retina, 15-inch, Mid 2015) with Intel Iris Pro and 1386MB of VRAM.

So then I simply turn to my own project and make sure that the input images remain within certain limits. Many thanks for your feedback.

normanius commented 6 years ago

Before your reply, I already did a few more tests because I suspected Apple's limited support for OpenCL for some of the issues. For the sake of reference, I'd like to share the following resources with people that may suffer from compatibility issues:

Keep in mind that it is possible that the Apple's drivers are not fully compliant with OpenCL standards, although the situation might have been improved over time:

normanius commented 6 years ago

@smistad A note about system requirements in the docs might be helpful. Also, testFAST should maybe execute simpler tests, not that users get the impression that FAST does not work in general. Also, it'd be great if the executable was a bit more tolerant to such kind of failures (warning messages instead of hard crashes). Just making suggestions, I'm good for now... :)

smistad commented 6 years ago

@normanius Good ideas, I will keep it in mind for the next version.