Skip empty mzml scans no error reporting

smith-chem-wisc / FlashLFQ

Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics

GNU Lesser General Public License v3.0

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Skip empty mzml scans no error reporting #112

Closed trishorts closed 2 years ago

trishorts commented 2 years ago

Reading mzML files produce a crash when any of the scans has no mz/intensity data. This PR is for an amended version of mzLib that skips those scans during the file read. NOTE: THERE IS NO ERROR REPORTING. I couldn't think of a way to do this that wouldn't break every call to file read. When I find a good solution, I will update mzLib and then flashLFQ.

side note: i also updated the version of NUNIT in this PR for no good reason other than I could

rmillikin commented 2 years ago

is this just an mzLib update? some protein string stuff seems to be mixed in