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smith-chem-wisc / FlashLFQ

Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
GNU Lesser General Public License v3.0
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Lower number of isotopes required to 1 but leave default at 2 #116

Open trishorts opened 2 years ago

trishorts commented 2 years ago

I may close this PR b/c it only effects the standalone version.

Some applications, like single cell proteomics, yield lower quality spectra. This results in several psms identified by the search engine showing up as an MBR peak in FlashLFQ instead of an MSMS identified peak.