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smith-chem-wisc / FlashLFQ

Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
GNU Lesser General Public License v3.0
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Update to mzlib544 #137

Closed trishorts closed 10 months ago

trishorts commented 10 months ago

The full changelog for mzlib 544 can be found here: https://github.com/smith-chem-wisc/mzLib/compare/1.0.543...1.0.544

This PR fixes a bug in the output so that rows have the sample number of values as columns which can break certain downstream applications.

This PR addresses this issue: https://github.com/smith-chem-wisc/FlashLFQ/issues/134

Support for oligos in mzlib shouldn't change anything for FlashLFQ yet. But, we should plausibly be able to accommodate both peptides and oligos in some future incarnation.

Alexander-Sol commented 10 months ago

Ran this version with the vignette data, the output looks fine, we get the expected results.

However, the AllPeptides output still has an extra tab in the header.