linux absolute paths don't work

smith-chem-wisc / FlashLFQ

Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics

GNU Lesser General Public License v3.0

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linux absolute paths don't work #71

Closed jvolkening closed 5 years ago

jvolkening commented 6 years ago

FlashLFQ on Linux doesn't seem to like absolute filepaths:

Invalid arguments - type "--help" for valid arguments

I suspect this is related to fclp/fluent-command-line-parser#42. Using the modification suggested at the end of that issue may solve this once FCLP 1.5 is available. In the meantime, it may be worth mentioning in the README. Relative paths work just fine on Linux.

rmillikin commented 6 years ago

Thanks for the report and investigation! I'll add that to the Readme.

rmillikin commented 6 years ago

FCLP looks like it hasn't been updated in a year. I doubt 1.5 is coming out anytime soon. I'll hunt around and see if I can find another option to use.

rmillikin commented 5 years ago

Fixed in version 1.0.1