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smith-chem-wisc / FlashLFQ

Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
GNU Lesser General Public License v3.0
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format input to allow pfind results #75

Closed trishorts closed 5 years ago

trishorts commented 6 years ago

File_Name Scan_No Exp.MH+ Charge Q-value Sequence Calc.MH+ Mass_Shift(Exp.-Calc.) Raw_Score Final_Score Modification Specificity Proteins Positions Label Target/Decoy Miss.Clv.Sites Avg.Frag.Mass.Shift Others QEPlus2_05042018_12_YY2.45169.45169.4.0.dta 45169 3121.401119 4 0 VLDPEDYGPNGLDIEWMQVNSDPAHHR 3121.395466 0.005653 34.984453 1.18871e-009 10,Deamidated[N];17,Oxidation[M]; 1 sp|P0DPA2|VSIG8_HUMAN/ 46,Y,E/ 1|0|0| target 0 1.569639 22027004 0 0 0 33554422 0 0 0 36 QEPlus2_05042018_12_YY2.44527.44527.4.0.dta 44527 3120.412257 4 0 VLDPEDYGPNGLDIEWMQVNSDPAHHR 3120.411450 0.000807 32.991729 1.4656e-009 17,Oxidation[M]; 1 sp|P0DPA2|VSIG8_HUMAN/ 46,Y,E/ 1|0| target 0 0.474375 7908 0 0 0 33554428 0 0 0 36 QEPlus2_05042018_6_X1.13283.13283.2.0.dta 13283 2383.953905 2 0 GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR 2383.951741 0.002164 35.872558 2.31698e-009 3 sp|P04264|K2C1_HUMAN/ 518,R,G/ 1| target 0 0.401425 33554424 0 0 0 1073741823 0 0 0 0 QEPlus2_05042018_12_YY2.44927.44927.4.0.dta 44927 3121.407331 4 0 VLDPEDYGPNGLDIEWMQVNSDPAHHR 3121.395466 0.011865 34.343263 2.33793e-009 10,Deamidated[N];17,Oxidation[M]; 1 sp|P0DPA2|VSIG8_HUMAN/ 46,Y,E/ 1|0|0| target 0 1.420738 4284148 0 0 0 33554422 0 0 0 100 QEPlus2_05042018_12_YY2.49313.49313.3.0.dta 49313 2635.375994 3 0 LISPESTVMLLEAQAATGGIIDPHR 2635.375852 0.000142 32.448126 2.64366e-009 9,Oxidation[M]; 3 sp|P15924|DESP_HUMAN/ 2038,K,N/ 1|0| target 0 0.110548 32694 0 0 0 8388574 0 0 0 36 QEPlus2_05042018_12_YY2.45087.45087.4.0.dta 45087 3121.402781 4 0 VLDPEDYGPNGLDIEWMQVNSDPAHHR 3121.395466 0.007315 33.260955 3.79759e-009 10,Deamidated[N];17,Oxidation[M]; 1 sp|P0DPA2|VSIG8_HUMAN/ 46,Y,E/ 1|0|0| target 0 1.671968 5250804 0 0 0 33554422 0 0 0 36 QEPlus2_05042018_12_YY2.45008.45008.4.0.dta 45008 3121.401347 4 0 VLDPEDYGPNGLDIEWMQVNSDPAHHR 3121.395466 0.005881 33.065695 3.97715e-009 10,Deamidated[N];17,Oxidation[M]; 1 sp|P0DPA2|VSIG8_HUMAN/ 46,Y,E/ 1|0|0| target 0 1.299155 1055996 0 0 0 33554420 0 0 0 36 QEPlus2_05042018_12_YY2.45631.45631.2.0.dta 45631 2228.118254 2 0 AKLEAAVAEAEQQGEAALSDAR 2228.115223 0.003031 30.403223 4.89721e-009 3 sp|P78386|KRT85_HUMAN/tr|F5GYI5|F5GYI5_HUMAN/ 360,R,C/148,R,C/ 1| target 1 1.467041 786430 0 0 0 2097151 0 0 0 0 QEPlus2_05042018_12_YY2.45556.45556.2.0.dta 45556 2228.119265 2 0 AKLEAAVAEAEQQGEAALSDAR 2228.115223 0.004042 30.423535 5.15757e-009 3 sp|P78386|KRT85_HUMAN/tr|F5GYI5|F5GYI5_HUMAN/ 360,R,C/148,R,C/ 1| target 1 2.164531 1835006 0 0 0 2097151 0 0 0 0 QEPlus2_05042018_12_YY2.39788.39788.2.0.dta 39788 2726.326707 2 0 QITSGPSAIGGSITVVAPDSCAPCQPR 2726.323501 0.003206 27.620032 1.10592e-008 21,Carbamidomethyl[C];24,Carbamidomethyl[C]; 3 sp|P78386|KRT85_HUMAN/tr|F5GYI5|F5GYI5_HUMAN/ 465,R,S/253,R,S/ 1|0|0| target 0 0.348042 19004894 0 0 0 33554430 0 0 0 36 QEPlus2_05042018_12_YY2.44603.44603.4.1.dta 44603 3120.412690 4 0 VLDPEDYGPNGLDIEWMQVNSDPAHHR 3120.411450 0.001240 30.134968 1.12488e-008 17,Oxidation[M]; 1 sp|P0DPA2|VSIG8_HUMAN/ 46,Y,E/ 1|0| target 0 0.275210 530148 0 0 0 33554420 0 0 0 36 QEPlus2_05042018_12_YY2.44842.44842.4.1.dta 44842 3120.417818 4 0 VLDPEDYGPNGLDIEWMQVNSDPAHHR 3120.411450 0.006368 30.973896 1.18232e-008 17,Oxidation[M]; 1 sp|P0DPA2|VSIG8_HUMAN/ 46,Y,E/ 1|0| target 0 0.614369 1578980 0 0 0 33554373 0 0 0 36 QEPlus2_05042018_10_YY3.44367.44367.4.1.dta 44367 3121.407147 4 0 VLDPEDYGPNGLDIEWMQVNSDPAHHR 3121.395466 0.011681 36.644597 1.24892e-008 10,Deamidated[N];17,Oxidation[M]; 1 sp|P0DPA2|VSIG8_HUMAN/ 46,Y,E/ 1|0|0| target 0 1.631976 5261564 0 0 0 33554422 0 0 0 100 QEPlus2_05042018_12_YY2.39861.39861.2.0.dta 39861 2726.328600 2 0 QITSGPSAIGGSITVVAPDSCAPCQPR 2726.323501 0.005099 27.598331 1.29406e-008 21,Carbamidomethyl[C];24,Carbamidomethyl[C]; 3 sp|P78386|KRT85_HUMAN/tr|F5GYI5|F5GYI5_HUMAN/ 465,R,S/253,R,S/ 1|0|0| target 0 1.953556 19267070 0 0 0 33554430 0 0 0 36 QEPlus2_05042018_12_YY2.39708.39708.2.0.dta 39708 2726.326054 2 0 QITSGPSAIGGSITVVAPDSCAPCQPR 2726.323501 0.002553 26.999267 1.57851e-008 21,Carbamidomethyl[C];24,Carbamidomethyl[C]; 3 sp|P78386|KRT85_HUMAN/tr|F5GYI5|F5GYI5_HUMAN/ 465,R,S/253,R,S/ 1|0|0| target 0 0.214438 19004926 0 0 0 33554430 0 0 0 36 QEPlus2_05042018_12_YY2.30113.30113.3.0.dta 30113 3344.429584 3 0 GEPTSCQPVHCETGNLETSCGSSTAYYVPR 3344.425124 0.004460 30.752626 1.58404e-008 6,Carbamidomethyl[C];11,Carbamidomethyl[C];20,Carbamidomethyl[C]; 1 sp|Q6PEX3|KR261_HUMAN/ 60,C,P/ 1|0|0|0| target 0 0.363459 152043132 0 0 0 268431834 0 0 0 36 QEPlus2_05042018_10_YY3.44900.44900.4.0.dta 44900 3121.396576 4 0 VLDPEDYGPNGLDIEWMQVNSDPAHHR 3121.395466 0.001110 35.305410 1.73756e-008 10,Deamidated[N];17,Oxidation[M]; 1 sp|P0DPA2|VSIG8_HUMAN/ 46,Y,E/ 1|0|0| target 0 1.826215 1122036 0 0 0 33554420 0 0 0 36 QEPlus2_05042018_12_YY2.44742.44742.4.2.dta 44742 3120.416308 4 0 VLDPEDYGPNGLDIEWMQVNSDPAHHR 3120.411450 0.004858 29.993634 1.77656e-008 17,Oxidation[M]; 1 sp|P0DPA2|VSIG8_HUMAN/ 46,Y,E/ 1|0| target 0 -0.369678 7652 0 0 0 33554400 0 0 0 36 QEPlus2_05042018_12_YY2.39938.39938.2.0.dta 39938 2726.330625 2 0 QITSGPSAIGGSITVVAPDSCAPCQPR 2726.323501 0.007124 27.035905 1.97542e-008 21,Carbamidomethyl[C];24,Carbamidomethyl[C]; 3 sp|P78386|KRT85_HUMAN/tr|F5GYI5|F5GYI5_HUMAN/ 465,R,S/253,R,S/ 1|0|0| target 0 0.508439 2227678 0 0 0 33554430 0 0 0 36

rmillikin commented 5 years ago

merged with #80