smith-chem-wisc / FlashLFQ

Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
GNU Lesser General Public License v3.0
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FlashLFQ: psm missing information? #91

Open CarlosHorro opened 4 years ago

CarlosHorro commented 4 years ago

Hi,

Using some example data and "playing" with FlashLFQ Galaxy wrapper, we were reviewing results given by FlashLFQ comparing them with moFF's ones, but we have found that FlashLFQ does not include into its "QuantifiedPeaks" file anything similar to moFF's "Spectrum Title", which is key for us in order to map the table row to the specific PSM (ie: in moFF you can find data like "controllerType=0 controllerNumber=1 scan=9870"). FlashLFQ just gives a "PSMs Mapped" which is just a count of the number of PSMs mapped. Would it be possible to add that information to FlashLFQ?

Greetings, Carlos from Barsnes Group at the UiB