Open Dmorgen opened 4 years ago
can you clarify? the q-value is reported in one of the text columns and you can go down the list to whatever you want. there is a setting in the Output Options of the search task to filter output to a given q-value.
only PSMs <1% FDR are used for parsimony. same with quantification. do you want to change that?
yes - I'd like to try several FDR setting for certain searches I'm running (various proteases and native peptides). is that possible?
this is not a currently user-alterable setting, but it should be pretty easy to make it one. maybe not the next release, but probably the one after that
Is it possible to set different FDR values (peptide/protein)?
Thanks! D.