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smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
MIT License
90 stars 45 forks source link

Unable to read RAW file in Mac Terminal #1982

Closed stsour closed 3 years ago

stsour commented 3 years ago

I see in earlier posts (#1967) that raw file reading capability has been added to Linux. I will be trying this out, but in the meantime I am trying to run the command line package on my mac through terminal, and it crashes giving this error message:

Welcome to MetaMorpheus 0.0.312 Starting task: Task1SearchTask Finished writing file: /Users/shiri/Google Drive File Stream/My Drive/Mistranslation Project/Papers/Clark_ccRCC/Proteomics Data/S1/2020-11-15-21-31-06/Task Settings/Task1SearchTaskconfig.toml Run failed, Exception: Unable to access RAW file!

Any plans to have raw file reading work on a Mac?

rmillikin commented 3 years ago

thanks for the crash report - I will check w/ someone on our team that has a mac computer and get back to you. In theory this should work as-is but it's difficult to regularly test it since our testing takes place in Windows and Linux environments.

stsour commented 3 years ago

No problem. I'm all set for now, working in a Linux environment.

rmillikin commented 3 years ago

@kyp4 was able to reproduce this error w/ her Mac. We use Thermo's RawFileReader to read .raw files, and unfortunately it looks like this package only supports Windows and Linux ( https://planetorbitrap.com/rawfilereader ). I mistakenly thought it also supported MacOS. So, it looks like until Thermo supports Mac users, .raw files are only readable on Windows and Linux.