smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
MIT License
91 stars 46 forks source link

Download Proteome Error #2257

Closed conorjenkins closed 1 year ago

conorjenkins commented 1 year ago

Describing the issue On the Database Screen, the download proteome function is no longer working. This is probably due to uniprot updating their API request format.

Reproducing the error Attemping to download any fasta file in either compressed, uncompressed, xml or fasta format results in a downloaded file containing a single line that lost like a request error.

UP000254649_reviewed.txt UP000003136_reviewed.xml.gz

Expected behavior for GUI Expected to Download Requested Proteome

Screenshots Download_Poroteome_Error_2

Download_Poroteome_Error_3

Download_Poroteome_Error

trishorts commented 1 year ago

thanks conor we'll have a look

trishorts commented 1 year ago

uninstall your current version and try this: https://ci.appveyor.com/api/buildjobs/7svcmtyg56p5b6oq/artifacts/MetaMorpheusInstaller.msi

conorjenkins commented 1 year ago

Pulled the database successfully with this version. Thanks!